Publications

Journal articles

Intrahost evolution leading to distinct lineages in the upper and lower respiratory tracts during SARS-CoV-2 prolonged infection
M. El Moussaoui, S. Bontems, C. Meex, M.-P. Hayette, M. Lejeune, S. L. Hong, S. Dellicour, M. Moutschen, N. Cambisano, N. Renotte, V. Bours, G. Darcis, M. Artesi, and K. Durkin.
"Virus Evolution", Vol. 10, Issue 1, Pages veae073, 2024.

How fast are viruses spreading in the wild?
S. Dellicour, P. Bastide, P. Rocu, D. Fargette, O. J. Hardy, M. A. Suchard, S. Guindon, and P. Lemey.
"PLoS Biology", Vol. 22, Issue 12, Pages e3002914, 2024.

Spread.gl: visualising pathogen dispersal in a high-performance browser application
Y. Li, N. Bollen, S. L. Hong, M. Brusselmans, F. Gámbaro, J. Klaps, M. A. Suchard, A. Rambaut, P. Lemey, S. Dellicour, and G. Baele.
"Bioinformatics", 2024.

Modeling the velocity of evolving lineages and predicting dispersal patterns
P. Bastide, P. Rocu, J. Wirtz, G. W. Hassler, F. Chevenet, D. Fargette, M. A. Suchard, S. Dellicour, P. Lemey, and S. Guindon.
"Proceedings of the National Academy of Sciences", Vol. 121, Issue 47, Pages e2411582121, 2024.

Integrating indicator-based and event-based surveillance data for risk mapping of West Nile virus, Europe, 2006 to 2021
K. Serres, D. Erazo, G. Despréaux, M. F. Vincenti-González, W. V. Bortel, E. Arsevska, and S. Dellicour.
"Eurosurveillance", Vol. 29, Issue 44, Pages 2400084, 2024.

Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature
A. Holtz, J. Van Weyenbergh, S. L. Hong, L. Cuypers, Á. O’Toole, G. Dudas, M. Gerdol, B. I. Potter, F. Ntoumi, C. C. M. Mapanguy, B. Vanmechelen, T. Wawina-Bokalanga, B. Van Holm, S. M. Menezes, K. Soubotko, G. Van Pottelbergh, E. Wollants, P. Vermeersch, A.-S. Jacob, B. Maes, D. Obbels, V. Matheeussen, G. Martens, J. Gras, B. Verhasselt, W. Laffut, C. Vael, T. Goegebuer, R. van der Kant, F. Rousseau, J. Schymkowitz, L. Serrano, J. Delgado, T. Wenseleers, V. Bours, E. André, M. A. Suchard, A. Rambaut, S. Dellicour, P. Maes, K. Durkin, and G. Baele.
"BMC Infectious Diseases", Vol. 24, Issue 1, Pages 1139, 2024.

Spatial distribution of poultry farms using point pattern modelling: A method to address livestock environmental impacts and disease transmission risks
M.-C. Dupas, F. Pinotti, C. Joshi, M. Joshi, W. Thanapongtharm, M. Dhingra, D. Blake, F. Tomley, M. Gilbert, and G. Fournié.
"PLoS Computational Biology", Vol. 20, Issue 10, Pages e1011980, 2024.

Enhancing Buprestidae monitoring in Europe: Trap catches increase with a fluorescent yellow colour but not with the presence of decoys
A. Kuhn, G. S. Martin, S. Hasbroucq, T. Beliën, J. Bonte, C. Bouget, L. Hautier, J. Sweeney, and J.-C. Grégoire.
"PLoS One", Vol. 19, Issue 7, Pages e0307397, 2024.

A spatially-heterogeneous impact of fencing on the African swine fever wavefront in the Korean wild boar population
J.-S. Lim, T. Vergne, E. Kim, C. Guinat, S. Dellicour, and M. Andraud.
"Veterinary Research", 2024.

Impact of Quaternary Amazonian river dynamics on the diversification of uakari monkeys (genus Cacajao)
F. E. Silva, L. W. Luna, R. Batista, F. Röhe, C. Gubili, I. P. Farias, T. Hrbek, J. Valsecchi, C. C. Ribas, A. D. McDevitt, S. Dellicour, J.-F. Flot, and J. P. Boubli.
"Journal of Biogeography", Vol. 51, Issue 8, Pages 1505-1517, 2024.

Dispersal history of SARS-CoV-2 in Galicia, Spain
P. Gallego-García, N. Estévez-Gómez, L. De Chiara, P. Alvariño, P. M. Juiz-González, I. Torres-Beceiro, M. Poza, J. A. Vallejo, S. Rumbo-Feal, K. Conde-Pérez, P. Aja-Macaya, S. Ladra, A. Moreno-Flores, M. J. Gude-González, A. Coira, A. Aguilera, J. J. Costa-Alcalde, R. Trastoy, G. Barbeito-Castiñeiras, D. García-Souto, J. M. C. Tubio, M. Trigo-Daporta, P. Camacho-Zamora, J. G. Costa, M. González-Domínguez, L. Canoura-Fernández, D. Glez-Peña, S. Pérez-Castro, J. J. Cabrera, C. Daviña-Núñez, M. Godoy-Diz, A. B. Treinta-Álvarez, M. I. Veiga, J. C. Sousa, N. S. Osório, I. Comas, F. González-Candelas, S. L. Hong, N. Bollen, S. Dellicour, G. Baele, M. A. Suchard, P. Lemey, A. Agulla, G. Bou, P. Alonso-García, M. L. Pérez-del-Molino, M. García-Campello, I. Paz-Vidal, B. Regueiro, and D. Posada.
"Journal of Medical Virology", Vol. 96, Issue 7, Pages e29773, 2024.

Emergence and dissemination of SARS-CoV-2 XBB.1.5 in New York
F. Gámbaro, R. Duerr, D. Dimartino, C. Marier, E. Iturrate, M. J. Mulligan, A. Heguy, and S. Dellicour.
"Virus Evolution", Vol. 10, Issue 1, Pages veae035, 2024.

Comparative population genetics of habitat-forming octocorals in two marine protected areas: eco-evolutionary and management implications
M. Horaud, R. Arizmendi-Meija, E. Nebot-Colomer, P. López-Sendino, A. Antunes, S. Dellicour, F. Viard, R. Leblois, C. Linares, J. Garrabou, and J.-B. Ledoux.
"Conservation Genetics", Vol. 25, Issue 2, Pages 319-334, 2024.

Genetic insights of H9N2 avian influenza viruses circulating in Mali and phylogeographic patterns in Northern and Western Africa
I. N. Sanogo, C. Guinat, S. Dellicour, M. A. Diakité, M. Niang, O. A. Koita, C. Camus, and M. Ducatez.
"Virus Evolution", Vol. 10, Issue 1, Pages veae011, 2024.

Dispersion patterns of SARS-CoV-2 variants Gamma, Lambda and Mu in Latin America and the Caribbean
T. Gräf, A. A. Martinez, G. Bello, S. Dellicour, P. Lemey, V. Colizza, M. Mazzoli, C. Poletto, V. L. O. Cardoso, A. F. da Silva, F. C. Motta, P. C. Resende, M. M. Siqueira, L. Franco, L. Gresh, J.-M. Gabastou, A. Rodriguez, A. Vicari, S. Aldighieri, J. Mendez-Rico, and J. A. Leite.
"Nature Communications", Vol. 15, Issue 1, Pages 1837, 2024.

Evidence of cross-channel dispersal into England of the forest pest Ips typographus
D. J. G. Inward, E. Caiti, K. Barnard, S. Hasbroucq, K. Reed, and J.-C. Grégoire.
"Journal of Pest Science", 2024.

Preemergence mating, inbreeding, and their consequences in the bark beetle Ips typographus
P. Dacquin, E. Caiti, J.-C. Grégoire, and S. Aron.
"Journal of Pest Science", Vol. 97, Issue 2, Pages 1005-1016, 2024.

Contribution of climate change to the spatial expansion of West Nile virus in Europe
D. Erazo, L. Grant, G. Ghisbain, G. Marini, F. J. Colón-González, W. Wint, A. Rizzoli, W. Van Bortel, C. B. F. Vogels, N. D. Grubaugh, M. Mengel, K. Frieler, W. Thiery, and S. Dellicour.
"Nature Communications", Vol. 15, Issue 1, Pages 1196, 2024.

Projected decline in European bumblebee populations in the twenty-first century
G. Ghisbain, W. Thiery, F. Massonnet, D. Erazo, P. Rasmont, D. Michez, and S. Dellicour.
"Nature", Vol. 628, Issue 8007, Pages 337-341, 2024.

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1
J.-H. Tsui, J. T. McCrone, B. Lambert, S. Bajaj, R. P. D. Inward, P. Bosetti, R. E. Pena, H. Tegally, V. Hill, A. E. Zarebski, T. P. Peacock, L. Liu, N. Wu, M. Davis, I. I. Bogoch, K. Khan, M. Kall, N. I. B. Abdul Aziz, R. Colquhoun, Á. O’Toole, B. Jackson, A. Dasgupta, E. Wilkinson, T. de Oliveira, The COVID-19 Genomics UK (COG-UK) consortium, T. R. Connor, N. J. Loman, V. Colizza, C. Fraser, E. Volz, X. Ji, B. Gutierrez, M. Chand, S. Dellicour, S. Cauchemez, J. Raghwani, M. A. Suchard, P. Lemey, A. Rambaut, O. G. Pybus, and M. U. G. Kraemer.
"Science", Vol. 381, Issue 6655, Pages 336-343, 2023.

Approaches to forecasting damage by invasive forest insects and pathogens: a cross-assessment
K. F. Raffa, E. G. Brockerhoff, J.-C. Grégoire, R. C. Hamelin, A. M. Liebhold, A. Santini, R. C. Venette, and M. J. Wingfield.
"BioScience", Pages biac108, 2023.

Application of phylodynamic tools to inform the public health response to COVID-19: qualitative analysis of expert opinions
S. N. Rich, V. Richards, C. Mavian, B. R. Magalis, N. Grubaugh, S. A. Rasmussen, S. Dellicour, B. Vrancken, C. Carrington, R. Fisk-Hoffman, D. Danso-Odei, D. Chacreton, J. Shapiro, M. N. Seraphin, C. Hepp, A. Black, A. Dennis, N. S. Trovão, A.-M. Vandamme, A. Rasmussen, M. Lauzardo, N. Dean, M. Salemi, and M. Prosperi.
"JMIR Formative Research", Vol. 7, Issue 1, Pages e39409, 2023.

Measuring the threat from a distance: insight into the complexity and perspectives for implementing sentinel plantation to test the host range of Xylella fastidiosa
N. Casarin, S. Hasbroucq, J. López-Mercadal, M. Á. Miranda, C. Bragard, and J.-C. Grégoire.
"NeoBiota", Vol. 84, Pages 47-80, 2023.

Impact and mitigation of sampling bias to determine viral spread: Evaluating discrete phylogeography through CTMC modeling and structured coalescent model approximations
M. Layan, N. F. Müller, S. Dellicour, N. De Maio, H. Bourhy, S. Cauchemez, and G. Baele.
"Virus Evolution", Vol. 9, Issue 1, Pages vead010, 2023.

Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron
S. Dellicour, S. L. Hong, V. Hill, D. Dimartino, C. Marier, P. Zappile, G. W. Harkins, P. Lemey, G. Baele, R. Duerr, and A. Heguy.
"PLoS Pathogens", Vol. 19, Issue 4, Pages e1011348, 2023.

Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico
H. G. Castelán-Sánchez*, L. Delaye*, R. P. Inward*, S. Dellicour*, B. Gutierrez*, N. Martinez de la Vina, C. Boukadida, O. G. Pybus, G. de Anda Jáuregui, P. Guzmán, M. Flores-Garrido, Ó. Fontanelli, M. Hernández Rosales, A. Meneses, G. Olmedo-Alvarez, A. H. Herrera-Estrella, A. Sánchez-Flores, J. E. Muñoz-Medina, A. Comas-García, B. Gómez-Gil, S. Zárate, B. Taboada, S. López, C. F. Arias, M. U. Kraemer, A. Lazcano, and M. Escalera Zamudio.
"eLife", Vol. 12, Pages e82069, 2023.

Uncovering the endemic circulation of rabies in Cambodia
M. Layan, L. Dacheux, P. Lemey, K. Brunker, L. Ma, C. Troupin, P. Dussart, V. Chevalier, J. L. N. Wood, S. Ly, V. Duong, H. Bourhy, and S. Dellicour.
"Molecular Ecology", Vol. 32, Issue 18, Pages 5140-5155, 2023.

Genomic monitoring of SARS-CoV-2 variants using sentinel SARI hospital surveillance
S. Denayer, F. E. Dufrasne, B. Monsieurs, R. van Eycken, S. Houben, L. Seyler, T. Demuyser, E. van Nedervelde, M. Bourgeois, B. Delaere, K. Magerman, D. Jouck, B. Lissoir, C. Sion, M. Reynders, E. Petit, N. Dauby, M. Hainaut, L. Laenen, P. Maes, G. Baele, S. Dellicour, L. Cuypers, E. André, S. Couvreur, R. Brondeel, C. Barbezange, N. Bossuyt, and S. van Gucht.
"Influenza and Other Respiratory Viruses", Vol. 17, Issue 10, Pages e13202, 2023.

Dispersal history and bidirectional human-fish host switching of invasive, hypervirulent Streptococcus agalactiae sequence type 283
D. Schar, Z. Zhang, J. Pires, B. Vrancken, M. A. Suchard, P. Lemey, M. Ip, M. Gilbert, T. V. Boeckel, and S. Dellicour.
"PLoS Global Public Health", Vol. 3, Issue 10, Pages e0002454, 2023.

Investigation of an international water polo tournament in Czechia as a potential source for early introduction of the SARS-CoV-2 Omicron variant into Belgium, Switzerland and Germany, November 2021
C. Rudin, N. Bollen, S. L. Hong, F. Wegner, L. Politi, K. Mellou, C. Geenen, S. Gorissen, B. Verhasselt, K. Durkin, C. Henin, A.-S. Logist, S. Dellicour, T. Resa, T. Stadler, P. Maes, L. Cuypers, E. André, A. Egli, and G. Baele.
"Eurosurveillance", Vol. 28, Issue 45, Pages 2300018, 2023.

Genomic epidemiology of West Nile virus in Europe
R. T. Koch, D. Erazo, A. J. Folly, N. Johnson, S. Dellicour, N. D. Grubaugh, and C. B. F. Vogels.
"One Health", Vol. 18, Pages 100664, 2023.

Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus
S. Van Borm*, S. Dellicour*, D. P. Martin, P. Lemey, E. I. Agianniotaki, E. D. Chondrokouki, D. Vidanovic, N. Vaskovic, T. Petroviċ, S. Laziċ, X. Koleci, A. Vodica, I. Djadjovski, K. Krstevski, F. Vandenbussche, A. Haegeman, K. De Clercq, and E. Mathijs.
"Journal of Virology", Vol. 97, Issue 11, Pages e01394-23, 2023.

Salicaceae as potential host plants of Xylella fastidiosa in European temperate regions
N. Casarin, S. Hasbroucq, L. Pesenti, A. Géradin, A. Emond, J. López-Mercadal, M. Á. Miranda, J.-C. Grégoire, and C. Bragard.
"European Journal of Plant Pathology", Vol. 165, Issue 3, Pages 489-507, 2023.

Phylogeographic reconstruction of the emergence and spread of Powassan virus in the northeastern United States
C. B. F. Vogels, D. E. Brackney, A. P. Dupuis, R. M. Robich, J. R. Fauver, A. F. Brito, S. C. Williams, J. F. Anderson, C. B. Lubelczyk, R. E. Lange, M. A. Prusinski, L. D. Kramer, J. L. Gangloff-Kaufmann, L. B. Goodman, G. Baele, R. P. Smith*, P. M. Armstrong*, A. T. Ciota*, S. Dellicour*, and N. D. Grubaugh*.
"Proceedings of the National Academy of Sciences USA", Vol. 120, Issue 16, Pages e2218012120, 2023.

Unravelling the effect of New Year’s Eve celebrations on SARS-CoV-2 transmission
C. Geenen, J. Thibaut, L. Laenen, J. Raymenants, L. Cuypers, P. Maes, S. Dellicour, and E. André.
"Scientific Reports", Vol. 13, Issue 1, Pages 22195, 2023.

Global trends in antimicrobial use in food-producing animals: 2020 to 2030
R. Mulchandani, Y. Wang, M. Gilbert, and T. P. V. Boeckel.
"PLoS Global Public Health", Vol. 3, Issue 2, Pages e0001305, 2023.

Cosmopolitan Scolytinae: strong common drivers, but too many singularities for accurate prediction
J.-C. Grégoire, H. Jactel, J. Hulcr, A. Battisti, D. Inward, F. Petter, and F. Grousset.
"NeoBiota", Vol. 84, Pages 81-105, 2023.

Combined phylogeographic analyses and epidemiologic contact tracing to characterize atypically pathogenic avian influenza (H3N1) epidemic, Belgium, 2019
S. Van Borm*, G. Boseret*, S. Dellicour*, M. Steensels, V. Roupie, F. Vandenbussche, E. Mathijs, A. Vilain, M. Driesen, M. Dispas, A. W. Delcloo, P. Lemey, I. Mertens, M. Gilbert, B. Lambrecht, and T. v. d. Berg.
"Emerging Infectious Diseases", Vol. 29, Issue 2, Pages 351, 2023.

Immunovirological and environmental screening reveals actionable risk factors for fatal COVID-19 during post-vaccination nursing home outbreaks
L. Cuypers, E. Keyaerts, S. L. Hong, S. Gorissen, S. M. Menezes, M. Starick, J. Van Elslande, M. Weemaes, T. Wawina-Bokalanga, J. Marti-Carreras, B. Vanmechelen, B. Van Holm, M. Bloemen, J.-M. Dogne, F. Dufrasne, K. Durkin, J. Ruelle, R. De Mendonca, E. Wollants, P. Vermeersch, C. Boulouffe, A. Djiena, C. Broucke, B. Catry, K. Lagrou, M. Van Ranst, J. Neyts, G. Baele, P. Maes*, E. André*, S. Dellicour*, and J. Van Weyenbergh*.
"Nature Aging", Vol. 3, Issue 6, Pages 722-733, 2023.

Two years of genomic surveillance in Belgium during the SARS-CoV-2 pandemic to attain country-wide coverage and monitor the introduction and spread of emerging variants
L. Cuypers, S. Dellicour, S. L. Hong, B. I. Potter, B. Verhasselt, N. Vereecke, L. Lambrechts, K. Durkin, V. Bours, S. Klamer, G. Bayon-Vicente, C. Vael, K. K. Ariën, R. De Mendonca, O. Soetens, C. Michel, B. Bearzatto, R. Naesens, J. Gras, A. Vankeerberghen, V. Matheeussen, G. Martens, D. Obbels, A. Lemmens, B. Van den Poel, E. Van Even, K. De Rauw, L. Waumans, M. Reynders, J. Degosserie, P. Maes, E. André, and G. Baele.
"Viruses", Vol. 14, Issue 10, Pages 2301, 2022.

Spatially explicit phylogeographical reconstruction sheds light on the history of the forest cover in the Congo Basin
K. Matvijev, S. Dellicour, E. Kaymak, and O. J. Hardy.
"Journal of Biogeography", Vol. 49, Issue 12, Pages 2256-2268, 2022.

Genome-associations of extended-spectrum ß-lactamase producing (ESBL) or AmpC producing E. coli in small and medium pig farms from Khon Kaen province, Thailand
J. Pires, L. Huber, R. A. Hickman, S. Dellicour, K. Lunha, T. Leangapichart, J. Jiwakanon, U. Magnusson, M. Sunde, J. D. Järhult, and T. P. Van Boeckel.
"BMC Microbiology", Vol. 22, Issue 1, Pages 253, 2022.

First wave of COVID-19 in Venezuela: Epidemiological, clinical, and paraclinical characteristics of first cases
D. A. Forero-Peña, F. S. Carrión-Nessi, D. L. Mendoza-Millán, Ó. D. Omaña-Ávila, M. D. Mejía-Bernard, N. A. Camejo-Ávila, D. M. Flora-Noda, V. L. Velásquez, F. R. Chacón-Labrador, J. M. Doval-Fernández, A. L. Maricuto, M. E. Grillet, J. V. Hernández-Villena, M. F. Vincenti-González, A. E. Paniz-Mondolfi, J. Orejas, V. I. Rodríguez, M. B. Contreras, R. N. Guevara, M. Carballo, J. Caldera, M. C. Redondo, and M. E. Landaeta.
"Journal of Medical Virology", Vol. 94, Issue 3, Pages 1175-1185, 2022.

The COVID HOME study research protocol: Prospective cohort study of non-hospitalised COVID-19 patients
A. Tami, B. T. F. v. d. Gun, K. I. Wold, M. F. Vincenti-González, A. C. M. Veloo, M. Knoester, V. P. R. Harmsma, G. C. d. Boer, A. L. W. Huckriede, D. Pantano, L. Gard, I. A. Rodenhuis-Zybert, V. Upasani, J. Smit, A. E. Dijkstra, J. J. d. Haan, J. M. v. Elst, J. v. d. Boogaard, S. O. Boyle, L. Nacul, H. G. M. Niesters, and A. W. Friedrich.
"PLoS One", Vol. 17, Issue 11, Pages e0273599, 2022.

Molecular epidemiology of HIV-1 subtype B infection across Florida reveals few Large superclusters with metropolitan origin
S. N. Rich, M. C. F. Prosperi, S. Dellicour, B. Vrancken, R. L. Cook, E. C. Spencer, M. Salemi, and C. Mavian.
"Microbiology Spectrum", Vol. 10, Issue 6, Pages e01889-22, 2022.

Early genomic surveillance and phylogeographic analysis of Getah virus, a reemerging arbovirus, in livestock in China
J. Zhao*, S. Dellicour*, Z. Yan, M. Veit, M. S. Gill, W.-T. He, X. Zhai, X. Ji, M. A. Suchard, P. Lemey, and S. Su.
"Journal of Virology", Vol. 97, Issue 1, Pages e01091-22, 2022.

When the beetles hit the fan: the Fan-Trap, an inexpensive, light and scalable insect trap under a Creative Commons License, for monitoring and experimental use
J.-C. Grégoire, E. Caiti, S. Hasbroucq, J.-M. Molenberg, and S. Willenz.
"Insects", Vol. 13, Issue 12, Pages 1122, 2022.

Investigating dispersal abilities of Aphrophoridae in European temperate regions to assess the threat of potential Xylella fastidiosa-based pathosystems
N. Casarin, S. Hasbroucq, G. Carestia, A. Glibert, C. Bragard, and J.-C. Grégoire.
"Journal of Pest Science", 2022.

Phylogeographic analysis of Tula hantavirus highlights a single introduction to central Europe
V. Cirkovic, S. Dellicour, G. Stamenkovic, M. Siljic, A. Gligic, and M. Stanojevic.
"Virus Evolution", Vol. 8, Issue 2, Pages veac112, 2022.

Distribution and intensification of pig production in China 2007–2017
Q. Zhao, M. C. Dupas, C. Axelsson, J. Artois, T. P. Robinson, and M. Gilbert.
"Environmental Research Letters", Vol. 17, Issue 12, Pages 124001, 2022.

SPREAD 4: online visualisation of pathogen phylogeographic reconstructions
K. D. Nahata, F. Bielejec, J. Monetta, S. Dellicour, A. Rambaut, M. A. Suchard, G. Baele, and P. Lemey.
"Virus Evolution", Vol. 8, Issue 2, Pages veac088, 2022.

Context-specific emergence and growth of the SARS-CoV-2 Delta variant
J. T. McCrone, V. Hill, S. Bajaj, R. E. Pena, B. C. Lambert, R. Inward, S. Bhatt, E. Volz, C. Ruis, S. Dellicour, G. Baele, A. E. Zarebski, A. Sadilek, N. Wu, A. Schneider, X. Ji, J. Raghwani, B. Jackson, R. Colquhoun, Á. O’Toole, T. P. Peacock, K. Twohig, S. Thelwall, G. Dabrera, R. Myers, N. R. Faria, C. Huber, I. I. Bogoch, K. Khan, L. du Plessis, J. C. Barrett, D. M. Aanensen, W. S. Barclay, M. Chand, T. Connor, N. J. Loman, M. A. Suchard, O. G. Pybus, A. Rambaut, and M. U. G. Kraemer.
"Nature", Vol. 610, Issue 7930, Pages 154-160, 2022.

Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades
R. Klitting, L. E. Kafetzopoulou, W. Thiery, G. Dudas, S. Gryseels, A. Kotamarthi, B. Vrancken, K. Gangavarapu, M. Momoh, J. D. Sandi, A. Goba, F. Alhasan, D. S. Grant, S. Okogbenin, E. Ogbaini-Emovo, R. F. Garry, A. R. Smither, M. Zeller, M. G. Pauthner, M. McGraw, L. D. Hughes, S. Duraffour, S. Günther, M. A. Suchard, P. Lemey, K. G. Andersen, and S. Dellicour.
"Nature Communications", Vol. 13, Issue 1, Pages 5596, 2022.

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study
C. N. Agoti, L. I. Ochola-Oyier, S. Dellicour, K. S. Mohammed, A. W. Lambisia, Z. R. de Laurent, J. M. Morobe, M. W. Mburu, D. O. Omuoyo, E. M. Ongera, L. Ndwiga, E. Maitha, B. Kitole, T. Suleiman, M. Mwakinangu, J. K. Nyambu, J. Otieno, B. Salim, J. Musyoki, N. Murunga, E. Otieno, J. N. Kiiru, K. Kasera, P. Amoth, M. Mwangangi, R. Aman, S. Kinyanjui, G. Warimwe, M. Phan, A. Agweyu, M. Cotten, E. Barasa, B. Tsofa, D. J. Nokes, P. Bejon, and G. Githinji.
"eLife", Vol. 11, Pages e71703, 2022.

Genome-wide diversity of Zika virus: exploring spatio-temporal dynamics to guide a new nomenclature proposal
S. G. Seabra, P. J. K. Libin, K. Theys, A. Zhukova, B. I. Potter, H. Nebenzahl-Guimaraes, A. E. Gorbalenya, I. A. Sidorov, V. Pimentel, M. Pingarilho, A. T. R. de Vasconcelos, S. Dellicour, R. Khouri, O. Gascuel, A.-M. Vandamme, G. Baele, L. Cuypers, and A. B. Abecasis.
"Virus Evolution", Vol. 8, Issue 1, Pages veac029, 2022.

Evaluation of screening program and phylogenetic analysis of SARS-CoV-2 infections among hospital healthcare workers in Liège, Belgium
M. El Moussaoui, N. Maes, S. L. Hong, N. Lambert, S. Gofflot, P. Dellot, Y. Belhadj, P. Huynen, M.-P. Hayette, C. Meex, S. Bontems, J. Defêche, L. Godderis, G. Molenberghs, C. Meuris, M. Artesi, K. Durkin, S. Rahmouni, C. Grégoire, Y. Beguin, M. Moutschen, S. Dellicour, and G. Darcis.
"Viruses", Vol. 14, Issue 6, Pages 1302, 2022.

Investigating COVID-19 vaccine impact on the risk of hospitalisation through the analysis of national surveillance data collected in Belgium
D. Erazo, M. F. Vincenti-González, J. A. F. van Loenhout, P. Hubin, M. Vandromme, P. Maes, M. Taquet, J. Van Weyenbergh, L. Catteau, and S. Dellicour.
"Viruses", Vol. 14, Issue 6, Pages 1315, 2022.

Accommodating sampling location uncertainty in continuous phylogeography
S. Dellicour, P. Lemey, M. A. Suchard, M. Gilbert, and G. Baele.
"Virus Evolution", Vol. 8, Issue 1, Pages veac041, 2022.

Hunting alters viral transmission and evolution in a large carnivore
N. M. Fountain-Jones, S. Kraberger, R. B. Gagne, M. L. J. Gilbertson, D. R. Trumbo, M. Charleston, P. E. Salerno, W. Chris Funk, K. Crooks, K. Logan, M. Alldredge, S. Dellicour, G. Baele, X. Didelot, S. VandeWoude, S. Carver, and M. E. Craft.
"Nature Ecology & Evolution", Vol. 6, Issue 2, Pages 174-182, 2022.

Phylogeography reveals association between swine trade and the spread of porcine epidemic diarrhea virus in China and across the world
W.-T. He, N. Bollen, Y. Xu, J. Zhao, S. Dellicour, Z. Yan, W. Gong, C. Zhang, L. Zhang, M. Lu, A. Lai, M. A. Suchard, X. Ji, C. Tu, P. Lemey, G. Baele, and S. Su.
"Molecular Biology and Evolution", Vol. 39, Issue 2, Pages msab364, 2022.

Considerable escape of SARS-CoV-2 Omicron to antibody neutralization
D. Planas, N. Saunders, P. Maes, F. Guivel-Benhassine, C. Planchais, J. Buchrieser, W.-H. Bolland, F. Porrot, I. Staropoli, F. Lemoine, H. Péré, D. Veyer, J. Puech, J. Rodary, G. Baele, S. Dellicour, J. Raymenants, S. Gorissen, C. Geenen, B. Vanmechelen, T. Wawina-Bokalanga, J. Martí-Carreras, L. Cuypers, A. Sève, L. Hocqueloux, T. Prazuck, F. A. Rey, E. Simon-Loriere, T. Bruel, H. Mouquet, E. André, and O. Schwartz.
"Nature", Vol. 602, Issue 7898, Pages 671-675, 2022.

Phycova – a tool for exploring covariates of pathogen spread
T. Blokker, G. Baele, P. Lemey, and S. Dellicour.
"Virus Evolution", Vol. 8, Issue 1, Pages veac015, 2022.

High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses
A. Mignotte, C. Garros, S. Dellicour, M. Jacquot, M. Gilbert, L. Gardès, T. Balenghien, M. Duhayon, I. Rakotoarivony, M. de Wavrechin, and K. Huber.
"Parasites and Vectors", Vol. 14, Issue 1, Pages 93, 2021.

Phylogeographic analysis of foot-and-mouth disease virus serotype O dispersal and associated drivers in East Africa
A. Munsey, F. N. Mwiine, S. Ochwo, L. Velazquez-Salinas, Z. Ahmed, F. Maree, L. L. Rodriguez, E. Rieder, A. Perez, S. Dellicour, and K. VanderWaal.
"Molecular Ecology", Vol. 30, Issue 15, Pages 3815-3825, 2021.

Estimating migration of Gonioctena quinquepunctata (Coleoptera: Chrysomelidae) Inside a mountain range in a spatially explicit context
C. Kastally, S. Dellicour, O. J. Hardy, M. Gilbert, and P. Mardulyn.
"Insect Systematics and Diversity", Vol. 5, Issue 5, 2021.

SARS-CoV-2 genomic characterization and clinical manifestation of the COVID-19 outbreak in Uruguay
V. Elizondo, G. W. Harkins, B. Mabvakure, S. Smidt, P. Zappile, C. Marier, M. T. Maurano, V. Perez, N. Mazza, C. Beloso, S. Ifran, M. Fernandez, A. Santini, V. Perez, V. Estevez, M. Nin, G. Manrique, L. Perez, F. Ross, S. Boschi, M. N. Zubillaga, R. Balleste, S. Dellicour, A. Heguy, and R. Duerr.
"Emerging Microbes & Infections", Vol. 10, Issue 1, Pages 51-65, 2021.

Host relatedness and landscape connectivity shape pathogen spread in the puma, a large secretive carnivore
N. M. Fountain-Jones, S. Kraberger, R. B. Gagne, D. R. Trumbo, P. E. Salerno, W. Chris Funk, K. Crooks, R. Biek, M. Alldredge, K. Logan, G. Baele, S. Dellicour, H. B. Ernest, S. VandeWoude, S. Carver, and M. E. Craft.
"Communications Biology", Vol. 4, Issue 1, Pages 1-9, 2021.

Mapping 20 years of urban expansion in 45 urban areas of Sub-Saharan Africa
Y. Forget, M. Shimoni, M. Gilbert, and C. Linard.
"Remote Sensing", Vol. 13, Issue 3, 2021.

Dispersal dynamics of SARS-CoV-2 lineages during the first epidemic wave in New York City
S. Dellicour, S. L. Hong, B. Vrancken, A. Chaillon, M. S. Gill, M. T. Maurano, S. Ramaswami, P. Zappile, C. Marier, G. W. Harkins, G. Baele, R. Duerr, and A. Heguy.
"PLoS Pathogens", Vol. 17, Issue 5, Pages e1009571, 2021.

Massive parallelization boosts big Bayesian multidimensional scaling
A. J. Holbrook, P. Lemey, G. Baele, S. Dellicour, D. Brockmann, A. Rambaut, and M. A. Suchard.
"Journal of Computational and Graphical Statistics", Vol. 30, Issue 1, Pages 11-24, 2021.

A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
S. Dellicour, K. Durkin, S. L. Hong, B. Vanmechelen, J. Martí-Carreras, M. S. Gill, C. Meex, S. Bontems, E. André, M. Gilbert, C. Walker, N. D. Maio, N. R. Faria, J. Hadfield, M.-P. Hayette, V. Bours, T. Wawina-Bokalanga, M. Artesi, G. Baele, and P. Maes.
"Molecular Biology and Evolution", Vol. 38, Issue 4, Pages 1608-1613, 2021.

Investigating the drivers of the spatio-temporal heterogeneity in COVID-19 hospital incidence — Belgium as a study case
S. Dellicour, C. Linard, N. Van Goethem, D. Da Re, J. Artois, J. Bihin, P. Schaus, F. Massonnet, H. Van Oyen, S. O. Vanwambeke, N. Speybroeck, and M. Gilbert.
"International Journal of Health Geographics", Vol. 20, Issue 1, Pages 29, 2021.

Variant analysis of SARS-CoV-2 genomes from Belgian military personnel engaged in overseas missions and operations
J.-P. Pirnay, P. Selhorst, S. L. Hong, C. Cochez, B. Potter, P. Maes, M. Petrillo, G. Dudas, V. Claes, Y. Van der Beken, G. Verbeken, J. Degueldre, S. Dellicour, L. Cuypers, F. T’Sas, G. Van den Eede, B. Verhasselt, W. Weuts, C. Smets, J. Mertens, P. Geeraerts, K. K. Ariën, E. André, P. Neirinckx, P. Soentjens, and G. Baele.
"Viruses", Vol. 13, Issue 7, Pages 1359, 2021.

Twenty-year trends in antimicrobial resistance from aquaculture and fisheries in Asia
D. Schar, C. Zhao, Y. Wang, D. G. J. Larsson, M. Gilbert, and T. P. Van Boeckel.
"Nature Communications", Vol. 12, Issue 1, Pages 5384, 2021.

Untangling introductions and persistence in COVID-19 resurgence in Europe
P. Lemey, N. Ruktanonchai, S. L. Hong, V. Colizza, C. Poletto, F. Van den Broeck, M. S. Gill, X. Ji, A. Levasseur, B. B. Oude Munnink, M. Koopmans, A. Sadilek, S. Lai, A. J. Tatem, G. Baele, M. A. Suchard, and S. Dellicour.
"Nature", Vol. 595, Issue 7869, Pages 713-717, 2021.

Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence
M. U. G. Kraemer*, V. Hill*, C. Ruis*, S. Dellicour*, S. Bajaj*, J. T. McCrone, G. Baele, K. V. Parag, A. L. Battle, B. Gutierrez, B. Jackson, R. Colquhoun, Á. O’Toole, B. Klein, A. Vespignani, COVID-19 Genomics UK (COG-UK) Consortium, E. Volz, N. R. Faria, D. M. Aanensen, N. J. Loman, L. du Plessis, S. Cauchemez, A. Rambaut, S. V. Scarpino, and O. G. Pybus.
"Science", Vol. 373, Issue 6557, Pages 889-895, 2021.

Relax, keep walking – a practical guide to continuous phylogeographic inference with BEAST
S. Dellicour, M. S. Gill, N. R. Faria, A. Rambaut, O. G. Pybus, M. A. Suchard, and P. Lemey.
"Molecular Biology and Evolution", Vol. 38, Issue 8, Pages 3486-3493, 2021.

On the use of phylogeographic inference to Infer the dispersal history of rabies virus: a review study
K. D. Nahata, N. Bollen, M. S. Gill, M. Layan, H. Bourhy, S. Dellicour*, and G. Baele*.
"Viruses", Vol. 13, Issue 8, Pages 1628, 2021.

Mathematical modelling and phylodynamics for the study of dog rabies dynamics and control: A scoping review
M. Layan, S. Dellicour, G. Baele, S. Cauchemez, and H. Bourhy.
"PLoS Neglected Tropical Diseases", Vol. 15, Issue 5, Pages e0009449, 2021.

The evolution of ant worker polymorphism correlates with multiple social traits
N. Lecocq de Pletincx, S. Dellicour, and S. Aron.
"Behavioral Ecology and Sociobiology", Vol. 75, Issue 8, Pages 113, 2021.

Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley
S. Issaka, O. Traoré, R. D. S. Longué, A. Pinel-Galzi, M. S. Gill, S. Dellicour, P. Bastide, S. Guindon, E. Hébrard, M.-J. Dugué, Y. Séré, S. Semballa, S. Aké, P. Lemey, and D. Fargette.
"Virus Evolution", Vol. 7, Issue 2, 2021.

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States
T. Alpert, A. F. Brito, E. Lasek-Nesselquist, J. Rothman, A. L. Valesano, M. J. MacKay, M. E. Petrone, M. I. Breban, A. E. Watkins, C. B. F. Vogels, C. C. Kalinich, S. Dellicour, A. Russell, J. P. Kelly, M. Shudt, J. Plitnick, E. Schneider, W. J. Fitzsimmons, G. Khullar, J. Metti, J. T. Dudley, M. Nash, N. Beaubier, J. Wang, C. Liu, P. Hui, A. Muyombwe, R. Downing, J. Razeq, S. M. Bart, A. Grills, S. M. Morrison, S. Murphy, C. Neal, E. Laszlo, H. Rennert, M. Cushing, L. Westblade, P. Velu, A. Craney, L. Cong, D. R. Peaper, M. L. Landry, P. W. Cook, J. R. Fauver, C. E. Mason, A. S. Lauring, K. St. George, D. R. MacCannell, and N. D. Grubaugh.
"Cell", Vol. 184, Issue 10, Pages 2595-2604.e13, 2021.

Exploiting genomic surveillance to map the spatio-temporal dispersal of SARS-CoV-2 spike mutations in Belgium across 2020
N. Bollen, M. Artesi, K. Durkin, S. L. Hong, B. Potter, B. Boujemla, B. Vanmechelen, J. Martí-Carreras, T. Wawina-Bokalanga, C. Meex, S. Bontems, M.-P. Hayette, E. André, P. Maes, V. Bours, G. Baele, and S. Dellicour.
"Scientific Reports", Vol. 11, Issue 1, Pages 18580, 2021.

Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity
Y. Butera, E. Mukantwari, M. Artesi, J. d. Umuringa, Á. N. O’Toole, V. Hill, S. Rooke, S. L. Hong, S. Dellicour, O. Majyambere, S. Bontems, B. Boujemla, J. Quick, P. C. Resende, N. Loman, E. Umumararungu, A. Kabanda, M. M. Murindahabi, P. Tuyisenge, M. Gashegu, J. P. Rwabihama, R. Sindayiheba, D. Gikic, J. Souopgui, W. Ndifon, R. Rutayisire, S. Gatare, T. Mpunga, D. Ngamije, V. Bours, A. Rambaut, S. Nsanzimana, G. Baele, K. Durkin, L. Mutesa, and N. Rujeni.
"Nature Communications", Vol. 12, Issue 1, Pages 1-11, 2021.

Global effects of extreme temperatures on wild bumblebees
B. Martinet, S. Dellicour, G. Ghisbain, K. Przybyla, E. Zambra, T. Lecocq, M. Boustani, R. Baghirov, D. Michez, and P. Rasmont.
"Conservation Biology", Vol. 35, Issue 5, Pages 1507-1518, 2021.

Leveraging of SARS-CoV-2 PCR cycle thresholds values to forecast COVID-19 trends
N. Yin, S. Dellicour, V. Daubie, N. Franco, M. Wautier, C. Faes, D. Van Cauteren, L. Nymark, N. Hens, M. Gilbert, M. Hallin, and O. Vandenberg.
"Frontiers in Medicine", Vol. 8, Pages 2036, 2021.

A world apart: Levels and determinants of excess mortality due to COVID-19 in care homes: The case of the Belgian region of Wallonia during the spring 2020 wave
O. J. Hardy, D. Dubourg, M. Bourguignon, S. Dellicour, T. Eggerickx, M. Gilbert, J.-P. Sanderson, A. Scohy, E. Vandael, and J.-M. Decroly.
"Demographic Research", Vol. 45, Issue 33, Pages 1011-1040, 2021.

Split it up and see: using proxies to highlight divergent inter-populational performances in aquaculture standardised conditions
L. Toomey, S. Dellicour, A. Kapusta, D. Żarski, F. Buhrke, S. Milla, P. Fontaine, and T. Lecocq.
"BMC Ecology & Evolution", Vol. 21, Issue 1, Pages 206, 2021.

Dynamics and dispersal of local human immunodeficiency virus epidemics within San Diego and across the San Diego–Tijuana border
B. Vrancken, S. R. Mehta, S. Ávila-Ríos, C. García-Morales, D. Tapia-Trejo, G. Reyes-Terán, S. Navarro-Álvarez, S. J. Little, M. Hoenigl, H. A. Pines, T. Patterson, S. A. Strathdee, D. M. Smith, S. Dellicour*, and A. Chaillon*.
"Clinical Infectious Diseases", Vol. 73, Issue 7, Pages e2018-e2025, 2021.

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
C. Mavian, S. K. Pond, S. Marini, B. R. Magalis, A.-M. Vandamme, S. Dellicour, S. V. Scarpino, C. Houldcroft, J. Villabona-Arenas, T. K. Paisie, N. S. Trovão, C. Boucher, Y. Zhang, R. H. Scheuermann, O. Gascuel, T.-Y. Lam, M. A. Suchard, A. Abecasis, E. Wilkinson, T. de Oliveira, A. I. Bento, H. A. Schmidt, D. Martin, J. Hadfield, N. Faria, N. D. Grubaugh, R. A. Neher, G. Baele, P. Lemey, T. Stadler, J. Albert, K. A. Crandall, T. Leitner, A. Stamatakis, M. Prosperi, and M. Salemi.
"Proceedings of the National Academy of Sciences, USA", Vol. 117, Issue 23, Pages 12522, 2020.

The risk of bark and ambrosia beetles associated with imported non-coniferous wood and potential horizontal phytosanitary measures
F. Grousset, J.-C. Grégoire, H. Jactel, A. Battisti, A. Benko Beloglavec, B. Hrašovec, J. Hulcr, D. Inward, A. Orlinski, and F. Petter.
"Forests", Vol. 11, Issue 3, Pages 342, 2020.

List of non-EU Scolytinae of coniferous hosts
E. P. o. P. Health (PLH), C. Bragard, K. Dehnen-Schmutz, F. Di Serio, P. Gonthier, M.-A. Jacques, J. A. Jaques Miret, A. F. Justesen, A. MacLeod, C. S. Magnusson, J. A. Navas-Cortes, S. Parnell, R. Potting, P. L. Reignault, H.-H. Thulke, W. van der Werf, A. V. Civera, J. Yuen, L. Zappalà, J.-C. Grégoire, F. Streissl, V. Kertész, and P. Milonas.
"EFSA Journal", Vol. 18, Issue 1, Pages e05933, 2020.

SARS-CoV-2 emergence and diffusion: a new disease manifesting human-environment interactions and a global geography of health
S. O. Vanwambeke, C. Linard, M. Gilbert, and S. Dellicour.
"Current Opinion in Environmental Sustainability", Vol. 46, Pages 43-45, 2020.

A worldwide perspective of the legislation and regulations governing sentinel plants
A. M. Vettraino, A. Santini, C. Nikolov, J.-C. Grégoire, R. Tomov, A. Orlinski, T. Maaten, H. Sverrisson, B. Økland, and R. Eschen.
"Biological Invasions", Vol. 22, Issue 2, Pages 353-362, 2020.

Comparative circulation dynamics of the five main HIV types in China
B. Vrancken, B. Zhao, X. Li, X. Han, H. Liu, J. Zhao, P. Zhong, Y. Lin, J. Zai, M. Liu, D. M. Smith, S. Dellicour*, and A. Chaillon*.
"Journal of Virology", Vol. 94, Issue 23, Pages e00683-20, 2020.

Wildlife conservation strategies should be taxon-specific - further evidence with bumblebees
G. Ghisbain, D. Michez, L. Marshall, P. Rasmont, and S. Dellicour.
"Diversity and Distribution", Vol. 26, Pages 1741-1751, 2020.

Global trends in antimicrobial use in aquaculture
D. Schar, E. Y. Klein, R. Laxminarayan, M. Gilbert, and T. P. Van Boeckel.
"Scientific Reports", Vol. 10, Issue 1, Pages 21878, 2020.

Unravelling the dispersal dynamics and ecological drivers of the African swine fever outbreak in Belgium
S. Dellicour, D. Desmecht, J. Paternostre, C. Malengreaux, A. Licoppe, M. Gilbert, and A. Linden.
"Journal of Applied Ecology", Vol. 57, Issue 8, Pages 1619-1629, 2020.

NOSOI: a stochastic agent-based transmission chain simulation framework in R
S. Lequime, P. Bastide, S. Dellicour, P. Lemey, and G. Baele.
"Methods in Ecology and Evolution", Vol. 11, Issue 8, Pages 1002-1007, 2020.

Genomic epidemiology, evolution, and transmission dynamics of porcine deltacoronavirus
W.-T. He*, X. Ji*, W. He*, S. Dellicour*, S. Wang, G. Li, L. Zhang, M. Gilbert, H. Zhu, G. Xing, M. Veit, Z. Huang, G.-Z. Han, Y. Huang, M. A. Suchard, G. Baele, P. Lemey, and S. Su.
"Molecular Biology and Evolution", Vol. 37, Pages 2641-2654, 2020.

Symptom evolution following the emergence of maize streak virus
A. L. Monjane*, S. Dellicour*, P. Hartnady, K. A. Oyeniran, B. E. Owor, M. Bezeidenhout, D. Linderme, R. A. Syed, L. Donaldson, S. Murray, E. P. Rybicki, A. Kvarnheden, E. Yazdkhasti, P. Lefeuvre, R. Froissart, P. Roumagnac, D. N. Shepherd, G. W. Harkins, M. A. Suchard, P. Lemey, A. Varsani, and D. P. Martin.
"eLife", Vol. 9, Pages e51984, 2020.

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework
S. Dellicour, S. Lequime, B. Vrancken, M. S. Gill, P. Bastide, K. Gangavarapu, N. L. Matteson, Y. Tan, L. du Plessis, A. A. Fisher, M. I. Nelson, M. Gilbert, M. A. Suchard, K. G. Andersen, N. D. Grubaugh, O. G. Pybus, and P. Lemey.
"Nature Communications", Vol. 11, Pages 5620, 2020.

Preparedness and vulnerability of African countries against importations of COVID-19: a modelling study
M. Gilbert, G. Pullano, F. Pinotti, E. Valdano, C. Poletto, P.-Y. Boëlle, E. D'Ortenzio, Y. Yazdanpanah, S. P. Eholie, M. Altmann, B. Gutierrez, M. U. G. Kraemer, and V. Colizza.
"The Lancet", Vol. 0, Issue 0, 2020.

Downscaling livestock census data using multivariate predictive models: Sensitivity to modifiable areal unit problem
D. D. Re, M. Gilbert, C. Chaiban, P. Bourguignon, W. Thanapongtharm, T. P. Robinson, and S. O. Vanwambeke.
"PLoS One", Vol. 15, Issue 1, Pages e0221070, 2020.

Preparing for a responsible lockdown exit strategy
M. Gilbert, M. Dewatripont, E. Muraille, J.-P. Platteau, and M. Goldman.
"Nature Medicine", Pages 1-2, 2020.

“Frozen evolution” of an RNA virus suggests accidental release as a potential cause of arbovirus re-emergence
D. J. Pascall, K. Nomikou, E. Bréard, S. Zientara, A. d. S. Filipe, B. Hoffmann, M. Jacquot, J. B. Singer, K. De Clercq, A. Bøtner, C. Sailleau, C. Viarouge, C. Batten, G. Puggioni, C. Ligios, G. Savini, P. A. van Rijn, P. P. C. Mertens, R. Biek, and M. Palmarini.
"PLoS Biology", Vol. 18, Issue 4, Pages e3000673, 2020.

Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference — Application to H5N1 spread in the Mekong region
S. Dellicour, P. Lemey, J. Artois, T. T. Lam, A. Fusaro, I. Monne, G. Cattoli, D. Kuznetsov, I. Xenarios, G. Dauphin, W. Kalpravidh, S. Von Dobschuetz, F. Claes, S. H. Newman, M. A. Suchard, G. Baele, and M. Gilbert.
"Bioinformatics", Vol. 36, Issue 7, Pages 2098-2104, 2020.

HIV persists throughout deep tissues with repopulation from multiple anatomical sources
A. Chaillon, S. Gianella, S. Dellicour, S. A. Rawlings, T. E. Schlub, M. F. D. Oliveira, C. Ignacio, M. Porrachia, B. Vrancken, and D. M. Smith.
"The Journal of Clinical Investigation", Vol. 130, Issue 4, Pages 1699-1712, 2020.

Getting off on the right foot: Integration of spatial distribution of genetic variability for aquaculture development and regulations, the European perch case
L. Toomey, S. Dellicour, T. Vanina, J. Pegg, Z. Kaczkowski, J. Kouřil, F. Teletchea, M. Bláha, P. Fontaine, and T. Lecocq.
"Aquaculture", Vol. 521, Pages 734981, 2020.

Genomic and epidemiological surveillance of Zika virus in the Amazon region
M. Giovanetti, N. R. Faria, J. Lourenço, J. G. d. Jesus, J. Xavier, I. M. Claro, M. U. G. Kraemer, V. Fonseca, S. Dellicour, J. Thézé, F. d. S. Salles, T. Gräf, P. P. Silveira, V. A. d. Nascimento, V. C. d. Souza, F. C. d. M. Iani, E. A. Castilho-Martins, L. N. Cruz, G. Wallau, A. Fabri, F. Levy, J. Quick, V. d. Azevedo, R. S. Aguiar, T. d. Oliveira, C. B. d. Menezes, M. d. C. Castilho, T. M. Terra, M. S. d. Silva, A. M. B. d. Filippis, A. L. d. Abreu, W. K. Oliveira, J. Croda, C. F. C. d. Albuquerque, M. R. T. Nunes, E. C. Sabino, N. Loman, F. G. Naveca, O. G. Pybus, and L. C. Alcantara.
"Cell Reports", Vol. 30, Issue 7, Pages 2275-2283.e7, 2020.

The impact of anthropogenic and environmental factors on human rabies cases in China
J. Yu, H. Xiao, W. Yang, S. Dellicour, M. U. G. Kraemer, Y. Liu, J. Cai, Z. X. Huang, Y. Zhang, Y. Feng, W. Huang, H. Zhang, M. Gilbert, and H. Tian.
"Transboundary and Emerging Diseases", Vol. 67, Pages 2544-2553, 2020.

Evolution and epidemic spread of SARS-CoV-2 in Brazil
D. S. Candido*, I. M. Claro*, J. G. d. Jesus*, W. M. Souza*, F. R. R. Moreira*, S. Dellicour*, T. A. Mellan*, L. d. Plessis, R. H. M. Pereira, F. C. S. Sales, E. R. Manuli, J. Thézé, L. Almeida, M. T. Menezes, C. M. Voloch, M. J. Fumagalli, T. M. Coletti, C. A. M. d. Silva, M. S. Ramundo, M. R. Amorim, H. H. Hoeltgebaum, S. Mishra, M. S. Gill, L. M. Carvalho, L. F. Buss, C. A. Prete, J. Ashworth, H. I. Nakaya, P. S. Peixoto, O. J. Brady, S. M. Nicholls, A. Tanuri, Á. D. Rossi, C. K. V. Braga, A. L. Gerber, A. P. d. C. Guimarães, N. Gaburo, C. S. Alencar, A. C. S. Ferreira, C. X. Lima, J. E. Levi, C. Granato, G. M. Ferreira, R. S. Francisco, F. Granja, M. T. Garcia, M. L. Moretti, M. W. Perroud, T. M. P. P. Castiñeiras, C. S. Lazari, S. C. Hill, A. A. d. S. Santos, C. L. Simeoni, J. Forato, A. C. Sposito, A. Z. Schreiber, M. N. N. Santos, C. Z. d. Sá, R. P. Souza, L. C. Resende-Moreira, M. M. Teixeira, J. Hubner, P. A. F. Leme, R. G. Moreira, M. L. Nogueira, D. Brazil-UK Centre for Arbovirus Discovery, N. M. Ferguson, S. F. Costa, J. L. Proenca-Modena, A. T. R. Vasconcelos, S. Bhatt, P. Lemey, C.-H. Wu, A. Rambaut, N. J. Loman, R. S. Aguiar, O. G. Pybus, E. C. Sabino, and N. R. Faria.
"Science", Vol. 369, Pages 1255-1260, 2020.

Genomic surveillance of yellow fever virus epizootic in São Paulo, Brazil, 2016 – 2018
S. C. Hill, R. de Souza, J. Thézé, I. Claro, R. S. Aguiar, L. Abade, F. C. P. Santos, M. S. Cunha, J. S. Nogueira, F. C. S. Salles, I. M. Rocco, A. Y. Maeda, F. G. S. Vasami, L. du Plessis, P. P. Silveira, J. G. de Jesus, J. Quick, N. C. C. A. Fernandes, J. M. Guerra, R. A. Réssio, M. Giovanetti, L. C. J. Alcantara, C. S. Cirqueira, J. Díaz-Delgado, F. L. L. Macedo, M. d. C. S. T. Timenetsky, R. de Paula, R. Spinola, J. Telles de Deus, L. F. Mucci, R. M. Tubaki, R. M. T. de Menezes, P. L. Ramos, A. L. de Abreu, L. N. Cruz, N. Loman, S. Dellicour, O. G. Pybus, E. C. Sabino, and N. R. Faria.
"PLoS Pathogens", Vol. 16, Issue 8, Pages e1008699, 2020.

In search of covariates of HIV-1 subtype B spread in the United States — A cautionary tale of large-scale Bayesian phylogeography
S. L. Hong, S. Dellicour, B. Vrancken, M. A. Suchard, M. T. Pyne, D. R. Hillyard, P. Lemey, and G. Baele.
"Viruses", Vol. 12, Issue 2, Pages 182, 2020.

HIV rebound Is predominantly fueled by genetically identical viral expansions from diverse reservoirs
M.-A. De Scheerder, B. Vrancken*, S. Dellicour*, T. Schlub, E. Lee, W. Shao, S. Rutsaert, C. Verhofstede, T. Kerre, T. Malfait, D. Hemelsoet, M. Coppens, A. Dhondt, D. De Looze, F. Vermassen, P. Lemey, S. Palmer, and L. Vandekerckhove.
"Cell Host & Microbe", Vol. 26, Pages 347-358, 2019.

Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa
N. R. Faria, N. Vidal, J. Lourenco, J. Raghwani, K. C. E. Sigaloff, A. J. Tatem, D. A. M. v. d. Vijver, A.-C. Pineda-Peña, R. Rose, C. L. Wallis, S. Ahuka-Mundeke, J.-J. Muyembe-Tamfum, J. Muwonga, M. A. Suchard, T. F. R. d. Wit, R. L. Hamers, N. Ndembi, G. Baele, M. Peeters, O. G. Pybus, P. Lemey, and S. Dellicour.
"PLoS Pathogens", Vol. 15, Issue 12, Pages e1007976, 2019.

Evolutionary stasis of an RNA virus indicates arbovirus re-emergence triggered by accidental release
D. J. Pascall, K. Nomikou, E. Bréard, S. Zientara, A. d. Silva Filipe, B. Hoffmann, M. Jacquot, J. B. Singer, K. De Clercq, A. Bøtner, C. Sailleau, C. Viarouge, C. Batten, G. Puggioni, C. Ligios, G. Savini, P. A. van Rijn, P. P. Mertens, R. Biek, and M. Palmarini.
"bioRxiv", 2019.

Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa
M. Rakotomalala, B. Vrancken, A. Pinel-Galzi, P. Ramavovololon, E. Hébrard, S. Randrianangaly, S. Dellicour, Lemey P, and D. Fargette.
"Virus Evolution", Vol. 5, Issue 2, Pages vez023, 2019.

Phylogeography of Lassa virus in Nigeria
D. U. Ehichioya, S. Dellicour, M. Pahlmann, T. Rieger, L. Oestereich, B. Becker-Ziaja, D. Cadar, Y. Ighodalo, T. Olokor, E. Omomoh, J. Oyakhilome, R. Omiunu, J. Agbukor, B. Ebo, J. Aiyepada, P. Ebhodaghe, B. Osiemi, S. Ehikhametalor, P. Akhilomen, M. Airende, R. Esumeh, E. Muoebonam, R. Giwa, A. Ekanem, G. Igenegbale, G. Odigie, G. Okonofua, R. Enigbe, E. O. Yerumoh, E. Pallasch, S. Bockholt, L. E. Kafetzopoulou, S. Duraffour, P. O. Okokhere, G. O. Akpede, S. A. Okogbenin, I. Odia, C. Aire, N. Akpede, E. Tobin, E. Ogbaini-Emovon, P. Lemey, D. I. Adomeh, D. A. Asogun, and S. Günther.
"Journal of Virology", Vol. 93, Pages e00929-19, 2019.

Using phylogeographic approaches to analyse the dispersal history, velocity, and direction of viral lineages – application to rabies virus spread in Iran
S. Dellicour, C. Troupin, F. Jahanbakhsh, A. Salama, S. Massoudi, M. K. Moghaddam, G. Baele, P. Lemey, A. Gholami, and H. Bourhy.
"Molecular Ecology", Vol. 28, Pages 4335-4350, 2019.

Bark beetle population dynamics in the Anthropocene: challenges and solutions
P. H. W. Biedermann, J. Müller, J.-C. Grégoire, A. Gruppe, J. Hagge, A. Hammerbacher, R. W. Hofstetter, D. Kandasamy, M. Kolarik, M. Kostovcik, P. Krokene, A. Sallé, D. L. Six, T. Turrini, D. Vanderpool, M. J. Wingfield, and C. Bässler.
"Trends in Ecology & Evolution", Vol. 34, Issue 10, Pages 914-924, 2019.

Global trends in antimicrobial resistance in animals in low- and middle-income countries
T. P. V. Boeckel, J. Pires, R. Silvester, C. Zhao, J. Song, N. G. Criscuolo, M. Gilbert, S. Bonhoeffer, and R. Laxminarayan.
"Science", Vol. 365, Issue 6459, Pages eaaw1944, 2019.

Point pattern simulation modelling of extensive and intensive chicken farming in Thailand: Accounting for clustering and landscape characteristics
C. Chaiban, C. Biscio, W. Thanapongtharm, M. Tildesley, X. Xiao, T. P. Robinson, S. O. Vanwambeke, and M. Gilbert.
"Agricultural Systems", Vol. 173, Pages 335-344, 2019.

Contrasting effects of host species and phylogenetic diversity on the occurrence of HPAI H5N1 in European wild birds
Z. Y. X. Huang, C. Xu, F. v. Langevelde, Y. Ma, T. Langendoen, T. Mundkur, Y. Si, H. Tian, R. H. S. Kraus, M. Gilbert, G.-Z. Han, X. Ji, H. H. T. Prins, and W. F. d. Boer.
"Journal of Animal Ecology", Vol. 88, Issue 7, Pages 1044-1053, 2019.

The current and future global distribution and population at risk of dengue
J. P. Messina, O. J. Brady, N. Golding, M. U. G. Kraemer, G. R. W. Wint, S. E. Ray, D. M. Pigott, F. M. Shearer, K. Johnson, L. Earl, L. B. Marczak, S. Shirude, N. D. Weaver, M. Gilbert, R. Velayudhan, P. Jones, T. Jaenisch, T. W. Scott, R. C. Reiner, and S. I. Hay.
"Nature Microbiology", Vol. 4, Issue 9, Pages 1508-1515, 2019.

Defining ecological regions in Italy based on a multivariate clustering approach: A first step towards a targeted vector borne disease surveillance
C. Ippoliti, L. Candeloro, M. Gilbert, M. Goffredo, G. Mancini, G. Curci, S. Falasca, S. Tora, A. D. Lorenzo, M. Quaglia, and A. Conte.
"PLoS One", Vol. 14, Issue 7, Pages e0219072, 2019.

Identifying the patterns and drivers of Puumala hantavirus enzootic dynamics using reservoir sampling
L. Laenen, V. Vergote, B. Vanmechelen, K. Tersago, G. Baele, P. Lemey, H. Leirs, S. Dellicour, B. Vrancken, and P. Maes.
"Virus Evolution", Vol. 5, Issue 1, 2019.

New frontiers in applied veterinary point-of-capture diagnostics: Toward early detection and control of zoonotic influenza
D. Schar, P. Padungtod, N. Tung, M. O'Leary, W. Kalpravidh, and F. Claes.
"Influenza and Other Respiratory Viruses", 2019.

Broad-scale species distribution models applied to data-poor areas
C. Guillaumot, J. Artois, T. Saucède, L. Demoustier, C. Moreau, M. Eléaume, A. Agüera, and B. Danis.
"Progress in Oceanography", Vol. 175, Pages 198-207, 2019.

Landscape genetic analyses of Cervus elaphus and Sus scrofa: comparative study and analytical developments
S. Dellicour, J. G. Prunier, S. Piry, M.-C. Eloy, S. Bertouille, A. Licoppe, A. C. Frantz, and M.-C. Flamand.
"Heredity", Vol. 123, Issue 2, Pages 228-241, 2019.

Duck production systems and highly pathogenic avian influenza H5N8 in France, 2016–2017
C. Guinat, J. Artois, A. Bronner, J. L. Guérin, M. Gilbert, and M. C. Paul.
"Scientific Reports", Vol. 9, Issue 1, Pages 6177, 2019.

Mass migration to Europe: an opportunity for elimination of hepatitis B virus?
M. Thijssen, P. Lemey, S. Amini-Bavil-Olyaee, S. Dellicour, S. M. Alavian, F. Tacke, C. Verslype, F. Nevens, and M. R. Pourkarim.
"The Lancet Gastroenterology and Hepatology", Vol. 4, Issue 4, Pages 315-323, 2019.

A spatial assessment of Nipah virus transmission in Thailand pig farms using multi-criteria decision analysis
W. Thanapongtharm, M. C. Paul, A. Wiratsudakul, V. Wongphruksasoong, W. Kalpravidh, K. Wongsathapornchai, S. Damrongwatanapokin, D. Schar, and M. Gilbert.
"BMC Veterinary Research", Vol. 15, Issue 1, Pages 73, 2019.

Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus
M. U. G. Kraemer, R. C. Reiner, O. J. Brady, J. P. Messina, M. Gilbert, D. M. Pigott, D. Yi, K. Johnson, L. Earl, L. B. Marczak, S. Shirude, N. D. Weaver, D. Bisanzio, T. A. Perkins, S. Lai, X. Lu, P. Jones, G. E. Coelho, R. G. Carvalho, W. V. Bortel, C. Marsboom, G. Hendrickx, F. Schaffner, C. G. Moore, H. H. Nax, L. Bengtsson, E. Wetter, A. J. Tatem, J. S. Brownstein, D. L. Smith, L. Lambrechts, S. Cauchemez, C. Linard, N. R. Faria, O. G. Pybus, T. W. Scott, Q. Liu, H. Yu, G. R. W. Wint, S. I. Hay, and N. Golding.
"Nature Microbiology", Pages 1, 2019.

Environmental heterogeneity and variations in the velocity of bluetongue virus spread in six European epidemics
G. Nicolas, C. Tisseuil, A. Conte, A. Allepuz, M. Pioz, R. Lancelot, and M. Gilbert.
"Preventive Veterinary Medicine", Vol. 149, Pages 1-9, 2018.

Predictive gravity models of livestock mobility in Mauritania: The effects of supply, demand and cultural factors
G. Nicolas, A. Apolloni, C. Coste, G. R. W. Wint, R. Lancelot, and M. Gilbert.
"PLoS One", Vol. 13, Issue 7, Pages e0199547, 2018.

Traits d’histoire de vie, effet Allee et risques d’introduction de scolytes exotiques
J.-C. Grégoire.
"Revue Forestière Française", Issue 6, Pages 597, 2018.

Dynamics of the 2004 avian influenza H5N1 outbreak in Thailand: The role of duck farming, sequential model fitting and control
R. Retkute, C. P. Jewell, T. P. Van Boeckel, G. Zhang, X. Xiao, W. Thanapongtharm, M. Keeling, M. Gilbert, and M. J. Tildesley.
"Preventive Veterinary Medicine", Vol. 159, Pages 171-181, 2018.

The impact of surveillance and control on highly pathogenic avian influenza outbreaks in poultry in Dhaka division, Bangladesh
E. M. Hill, T. House, M. S. Dhingra, W. Kalpravidh, S. Morzaria, M. G. Osmani, E. Brum, M. Yamage, M. A. Kalam, D. J. Prosser, J. Y. Takekawa, X. Xiao, M. Gilbert, and M. J. Tildesley.
"PLoS Computational Biology", Vol. 14, Issue 9, Pages e1006439, 2018.

Transmission dynamics of re-emerging rabies in domestic dogs of rural China
H. Tian, Y. Feng, B. Vrancken, B. Cazelles, H. Tan, M. S. Gill, Q. Yang, Y. Li, W. Yang, Y. Zhang, Y. Zhang, P. Lemey, O. G. Pybus, N. C. Stenseth, H. Zhang, and S. Dellicour.
"PLoS Pathogens", Vol. 14, Issue 12, Pages e1007392, 2018.

Colonization of weakened trees by mass-attacking bark beetles: no penalty for pioneers, scattered initial distributions and final regular patterns
E. Toffin, E. Gabriel, M. Louis, J.-L. Deneubourg, and J.-C. Grégoire.
"Royal Society Open Science", Vol. 5, Issue 1, Pages 170454, 2018.

Towards the description of livestock mobility in Sahelian Africa: Some results from a survey in Mauritania
A. Apolloni, G. Nicolas, C. Coste, A. B. E. Mamy, B. Yahya, A. S. E. Arbi, M. B. Gueya, D. Baba, M. Gilbert, and R. Lancelot.
"PLoS One", Vol. 13, Issue 1, Pages e0191565, 2018.

Monochamus species from different continents can be effectively detected with the same trapping protocol
C. K. Boone, J. Sweeney, P. Silk, C. Hughes, R. P. Webster, F. Stephen, L. Maclauchlan, B. Bentz, A. Drumont, B. Zhao, N. Berkvens, H. Casteels, and J.-C. Grégoire.
"Journal of Pest Science", 2018.

Forecasting the spatial and seasonal dynamic of Aedes albopictus oviposition activity in Albania and Balkan countries
C. Tisseuil, E. Velo, S. Bino, P. Kadriaj, K. Mersini, A. Shukullari, A. Simaku, E. Rogozi, B. Caputo, E. Ducheyne, A. d. Torre, P. Reiter, and M. Gilbert.
"PLoS Neglected Tropical Diseases", Vol. 12, Issue 2, Pages e0006236, 2018.

Comparative epidemiology of highly pathogenic avian influenza virus H5N1 and H5N6 in vietnamese live bird markets: spatiotemporal patterns of distribution and risk factors
K. C. Mellor, A. Meyer, D. A. Elkholly, G. Fournié, P. T. Long, K. Inui, P. Padungtod, M. Gilbert, S. H. Newman, T. Vergne, D. U. Pfeiffer, and K. B. Stevens.
"Frontiers in Veterinary Science", Vol. 5, 2018.

Avian influenza A (H5N1) outbreaks in different poultry farm types in Egypt: the effect of vaccination, closing status and farm size
J. Artois, C. Ippoliti, A. Conte, M. S. Dhingra, P. Alfonso, A. E. Tahawy, A. Elbestawy, H. F. Ellakany, and M. Gilbert.
"BMC Veterinary Research", Vol. 14, Issue 1, 2018.

Supervised classification of built-up areas in Sub-Saharan African cities using Landsat Imagery and OpenStreetMap
Y. Forget, C. Linard, and M. Gilbert.
"Remote Sensing", Vol. 10, Issue 7, Pages 1145, 2018.

How do you find the Green Sheep? A critical review of the use of remotely sensed imagery to detect and count animals
T. Hollings, M. Burgman, M. van Andel, M. Gilbert, T. Robinson, and A. Robinson.
"Methods in Ecology and Evolution", Vol. 9, Issue 4, 2018.

Geographical and historical patterns in the emergences of novel highly pathogenic avian influenza (HPAI) H5 and H7 viruses in poultry
M. S. Dhingra, J. Artois, S. Dellicour, P. Lemey, G. Dauphin, S. Von Dobschuetz, T. P. Van Boeckel, D. M. Castellan, S. Morzaria, and M. Gilbert.
"Frontiers in Veterinary Science", Vol. 5, Issue 84, 2018.

Modelling changing population distributions: an example of the Kenyan Coast, 1979–2009
C. Linard, C. W. Kabaria, M. Gilbert, A. J. Tatem, A. E. Gaughan, F. R. Stevens, A. Sorichetta, A. M. Noor, and R. W. Snow.
"International Journal of Digital Earth", Vol. 0, Issue 0, Pages 1-13, 2017.

Is prey specificity constrained by geography? Semiochemically mediated oviposition in Rhizophagus grandis (Coleoptera: Monotomidae) with its specific prey, Dendroctonus micans (Coleoptera: Curculionidae: Scolytinae), and with exotic Dendroctonus species
L. Dohet, and J.-C. Grégoire.
"Journal of Chemical Ecology", Vol. 43, Issue 8, Pages 778-793, 2017.

The impact of urbanization and population density on childhood Plasmodium falciparum parasite prevalence rates in Africa
C. W. Kabaria, M. Gilbert, A. M. Noor, R. W. Snow, and C. Linard.
"Malaria Journal", Vol. 16, Pages 49, 2017.

A risk categorisation and analysis of the geographic and temporal dynamics of the European import of plants for planting
R. Eschen, J. C. Douma, J.-C. Grégoire, F. Mayer, L. Rigaux, and R. P. J. Potting.
"Biological Invasions", Pages 1-15, 2017.

Epidemiology of avian influenza A H7N9 virus in human beings across five epidemics in mainland China, 2013–17: an epidemiological study of laboratory-confirmed case series
X. Wang, H. Jiang, P. Wu, T. M. Uyeki, L. Feng, S. Lai, L. Wang, X. Huo, K. Xu, E. Chen, X. Wang, J. He, M. Kang, R. Zhang, J. Zhang, J. Wu, S. Hu, H. Zhang, X. Liu, W. Fu, J. Ou, S. Wu, Y. Qin, Z. Zhang, Y. Shi, J. Zhang, J. Artois, V. J. Fang, H. Zhu, Y. Guan, M. Gilbert, P. W. Horby, G. M. Leung, G. F. Gao, B. J. Cowling, and H. Yu.
"The Lancet Infectious Diseases", Vol. 0, Issue 0, 2017.

Effects of the wet catching method on the detection of Bursaphelenchus xylophilus from trapped longhorn beetle vectors
N. Berkvens, L. Waeyenberge, H. Casteels, N. de Sutter, M. L. Inácio, A. M. Fontes, C. Boone, J.-C. Grégoire, and N. Viaene.
"Nematology", Vol. 19, Issue 6, Pages 671-680, 2017.

Using viral gene sequences to compare and explain the heterogeneous spatial dynamics of virus epidemics
S. Dellicour, R. Rose, N. R. Faria, L. F. P. Vieira, H. Bourhy, M. Gilbert, P. Lemey, and O. G. Pybus.
"Molecular Biology and Evolution", Vol. 34, Issue 10, Pages 2563-2571, 2017.

Reducing antimicrobial use in food animals
T. P. Van Boeckel, E. E. Glennon, D. Chen, M. Gilbert, T. P. Robinson, B. T. Grenfell, S. A. Levin, S. Bonhoeffer, and R. Laxminarayan.
"Science", Vol. 357, Issue 6358, Pages 1350-1352, 2017.

Could Changes in the agricultural landscape of northeastern China have influenced the long-distance transmission of highly pathogenic avian influenza H5Nx viruses?
M. Gilbert, D. J. Prosser, G. Zhang, J. Artois, M. S. Dhingra, M. Tildesley, S. H. Newman, F. Guo, P. Black, F. Claes, W. Kalpradvidh, Y. Shin, W. Jeong, J. Y. Takekawa, H. Lee, and X. Xiao.
"Frontiers in Veterinary Science", Vol. 4, 2017.

Climate drivers of bark beetle outbreak dynamics in Norway spruce forests
L. Marini, B. Okland, Jönsson, B. J. Bentz, A. Carroll, B. Forster, J.-C. Grégoire, Hurling, L.-M. Nageleisen, Netherer, H. P. H. P. Ravn, A. Weed, and M. L. Schroeder.
"Ecography", 2017.

Changing epidemiology of human Brucellosis, China, 1955–2014
S. Lai, H. Zhou, W. Xiong, M. Gilbert, Z. Huang, J. Yu, W. Yin, L. Wang, Q. Chen, Y. Li, D. Mu, L. Zeng, X. Ren, M. Geng, Z. Zhang, B. Cui, T. Li, D. Wang, Z. Li, N. A. Wardrop, A. J. Tatem, and H. Yu.
"Emerging Infectious Diseases", Vol. 23, Issue 2, Pages 184-194, 2017.

The EFSA quantitative approach to pest risk assessment – methodological aspects and case studies
G. Gilioli, G. Schrader, J.-C. Grégoire, A. MacLeod, O. Mosbach-Schulz, T. Rafoss, V. Rossi, G. Urek, and W. van der Werf.
"EPPO Bulletin", Vol. 47, Issue 2, Pages 213-219, 2017.

Spiny prey, fortunate prey. Dorsal spines are an asset in intraguild interactions among lady beetles
L. Hautier, G. San Martin, J.-P. Jansen, E. Branquart, and J.-C. Grégoire.
"Frontiers in Ecology and Evolution", Vol. 5, 2017.

Using random forest to improve the downscaling of global livestock census data
G. Nicolas, T. P. Robinson, G. R. W. Wint, G. Conchedda, G. Cinardi, and M. Gilbert.
"PLoS One", Vol. 11, Issue 3, Pages e0150424, 2016.

Spatial analysis and characteristics of pig farming in Thailand
W. Thanapongtharm, C. Linard, P. Chinson, S. Kasemsuwan, M. Visser, A. E. Gaughan, M. Epprech, T. P. Robinson, and M. Gilbert.
"BMC Veterinary Research", Vol. 12, Issue 1, 2016.

Antibiotic resistance is the quintessential One Health issue
T. P. Robinson, D. P. Bu, J. Carrique-Mas, E. M. Fèvre, M. Gilbert, D. Grace, S. I. Hay, J. Jiwakanon, M. Kakkar, S. Kariuki, R. Laxminarayan, J. Lubroth, U. Magnusson, P. Thi Ngoc, T. P. Van Boeckel, and M. E. J. Woolhouse.
"Transactions of the Royal Society of Tropical Medicine and Hygiene", Vol. 110, Issue 7, Pages 377-380, 2016.

Antibiotic resistance: mitigation opportunities in livestock sector development
T. P. Robinson, D. P. Bu, J. Carrique-Mas, E. M. Fèvre, M. Gilbert, D. Grace, S. I. Hay, J. Jiwakanon, M. Kakkar, S. Kariuki, R. Laxminarayan, J. Lubroth, U. Magnusson, P. Thi Ngoc, T. P. Van Boeckel, and M. E. J. Woolhouse.
"Animal: An International Journal of Animal Bioscience", Pages 1-3, 2016.

Did neoliberalizing West African forests produce a new niche for Ebola?
R. G. Wallace, R. Kock, L. Bergmann, M. Gilbert, L. Hogerwerf, C. Pittiglio, R. Mattioli, and R. Wallace.
"International Journal of Health Services: Planning, Administration, Evaluation", Vol. 46, Issue 1, Pages 149-165, 2016.

Mapping intra-urban malaria risk using high resolution satellite imagery: a case study of Dar es Salaam
C. W. Kabaria, F. Molteni, R. Mandike, F. Chacky, A. M. Noor, R. W. Snow, and C. Linard.
"International Journal of Health Geographics", Vol. 15, Issue 1, 2016.

Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation
M. S. Dhingra, J. Artois, T. P. Robinson, C. Linard, C. Chaiban, I. Xenarios, R. Engler, R. Liechti, D. Kuznetsov, X. Xiao, S. V. Dobschuetz, F. Claes, S. H. Newman, G. Dauphin, and M. Gilbert.
"eLife", Vol. 5, Pages e19571, 2016.

Fallen trees' last stand against bark beetles
M. Louis, L. Dohet, and J.-C. Grégoire.
"Forest Ecology and Management", Vol. 359, Pages 44-50, 2016.

Bacterial and fungal symbionts of parasitic Dendroctonus bark beetles
L. Dohet, J.-C. Grégoire, A. B. Berasategui, M. K. Kaltenpoth, and P. B. Biedermann.
"FEMS Microbiology, Ecology", Vol. 92, Issue 9, 2016.

Modelling collective foraging in endemic bark beetle populations
M. Louis, E. Toffin, J.-C. Grégoire, and J.-L. Deneubourg.
"Ecological Modelling", Vol. 337, Pages 188-199, 2016.

Clade-level spatial modelling of HPAI H5N1 dynamics in the Mekong region reveals new patterns and associations with agro-ecological factors
J. Artois, S. H. Newman, M. S. Dhingra, C. Chaiban, C. Linard, G. Cattoli, I. Monne, A. Fusaro, I. Xenarios, R. Engler, R. Liechti, D. Kuznetsov, T. L. Pham, T. Nguyen, V. D. Pham, D. Castellan, S. Von Dobschuetz, F. Claes, G. Dauphin, K. Inui, and M. Gilbert.
"Scientific Reports", Vol. 6, Pages 30316, 2016.

Evaluating methods to quantify spatial variation in the velocity of biological invasions
C. Tisseuil, A. Gryspeirt, R. Lancelot, M. Pioz, A. Liebhold, and M. Gilbert.
"Ecography", Vol. 39, Issue 5, Pages 409-418, 2016.

Improving AfriPop dataset with settlement extents extracted from RapidEye for the border region comprising South-Africa, Swaziland and Mozambique
J. Deleu, J. Franke, M. Gebreslasie, and C. Linard.
"Geospatial Health", Vol. 10, Issue 2, 2015.

Towards a resource-based habitat approach for spatial modelling of vector-borne disease risks: Resource-based habitats for vector-borne diseases
N. Hartemink, S. O. Vanwambeke, B. V. Purse, M. Gilbert, and H. Van Dyck.
"Biological Reviews", Vol. 90, Issue 4, Pages 1151-1162, 2015.

Cold tolerance of the predatory ladybird Cryptolaemus montrouzieri
S. S. Maes, J.-C. Grégoire, and P. P. de Clercq.
"BioControl", Vol. 60, Issue 2, Pages 199-207, 2015.

Comparative multi-locus phylogeography of two Palaearctic spruce bark beetles: influence of contrasting ecological strategies on genetic variation
F. Mayer, F. Piel, A. A. Cassel-Lundhagen, N. Kirichenko, L. Grumiau, B. Okland, C. C. Bertheau, J.-C. Grégoire, and P. Mardulyn.
"Molecular Ecology", Vol. 24, Issue 6, Pages 1292-1310, 2015.

The dawn of structural one health: a new science tracking disease emergence along circuits of capital
R. G. Wallace, L. Bergmann, R. Kock, M. Gilbert, L. Hogerwerf, R. Wallace, and M. Holmberg.
"Social Science and Medicine", Vol. 129, Pages 68-77, 2015.

Trade patterns of the tree nursery industry in Europe and changes following findings of citrus longhorn beetle, Anoplophora chinensis Forster
R. R. Eschen, J.-C. Grégoire, G. G. M. Hengeveld, B. B. M. de Hoop, L. Rigaux, and R. P. J. R. P. J. Potting.
"NeoBiota", Vol. 26, Pages 1-20, 2015.

Global trends in antimicrobial use in food animals
T. P. Van Boeckel, C. Brower, M. Gilbert, B. T. Grenfell, S. A. Levin, T. P. Robinson, A. Teillant, and R. Laxminarayan.
"Proceedings of the National Academy of Sciences, USA", Vol. 112, Issue 18, Pages 5649-5654, 2015.

Phytosanitary inspection of woody plants for planting at european union entry points: A practical enquiry
R. R. Eschen, L. Rigaux, L. L. Sukovata, A. M. A. M. Vettraino, M. M. Marzano, and J.-C. Grégoire.
"Biological Invasions", Vol. 17, Issue 8, Pages 2403-2413, 2015.

Spatial characterization of colonies of the flying fox bat, a carrier of Nipah virus in Thailand
W. Thanapongtharm, C. Linard, W. Wiriyarat, P. Chinsorn, B. Kanchanasaka, X. Xiao, C. Biradar, R. G. Wallace, and M. Gilbert.
"BMC Veterinary Research", Vol. 11, Issue 1, 2015.

Harmonia + and Pandora +: risk screening tools for potentially invasive plants, animals and their pathogens
B. B. D’hondt, I. Stiers, S. S. Quoilin, J. Cigar, A. Heughebaert, E. E. Branquart, S. Vanderhoeven, S. S. Roelandt, F. Mayer, V. V. Versteirt, T. Adriaens, E. Ducheyne, G. San Martin Y Gomez, and J.-C. Grégoire.
"Biological Invasions", Vol. 17, Issue 6, Pages 1869-1883, 2015.

Exploring nationally and regionally defined models for large area population mapping
A. E. Gaughan, F. R. Stevens, C. Linard, N. N. Patel, and A. J. Tatem.
"International Journal of Digital Earth", Vol. 8, Issue 12, Pages 989-1006, 2015.

Bayesian inference reveals host-specific contributions to the epidemic expansion of Influenza A H5N1
N. S. Trovão, M. A. Suchard, G. Baele, M. Gilbert, and P. Lemey.
"Molecular Biology and Evolution", Pages msv185, 2015.

Disaggregating census data for population mapping using random forests with remotely-sensed and ancillary data
F. R. Stevens, A. E. Gaughan, C. Linard, and A. J. Tatem.
"PLoS One", Vol. 10, Issue 2, Pages e0107042, 2015.

High-resolution gridded population datasets for Latin America and the Caribbean in 2010, 2015, and 2020
A. Sorichetta, G. M. Hornby, F. R. Stevens, A. E. Gaughan, C. Linard, and A. J. Tatem.
"Scientific Data", Vol. 2, Pages 150045, 2015.

Income disparities and the global distribution of intensively farmed chicken and pigs
M. Gilbert, G. Conchedda, T. P. Van Boeckel, G. Cinardi, C. Linard, G. Nicolas, W. Thanapongtharm, L. D'Aietti, W. Wint, S. H. Newman, and T. P. Robinson.
"PLoS One", Vol. 10, Issue 7, Pages e0133381, 2015.

Dynamic population mapping using mobile phone data
P. Deville, C. Linard, S. Martin, M. Gilbert, F. R. Stevens, A. E. Gaughan, V. D. Blondel, and A. J. Tatem.
"Proceedings of the National Academy of Sciences, USA", Vol. 111, Issue 45, Pages 15888-15893, 2014.

Ecosystem services of mixed species forest stands and monocultures: Comparing practitioners and scientists perceptions with formal scientific knowledge
M. Carnol, L. L. Baeten, E. E. Branquart, J.-C. Grégoire, A. Heughebaert, B. Muys, Q. Ponette, and K. Verheyen.
"Forestry", Vol. 87, Issue 5, Pages 639-653, 2014.

Predicting the risk of avian influenza A H7N9 infection in live-poultry markets across Asia
M. Gilbert, N. Golding, H. Zhou, G. R. W. Wint, T. P. Robinson, A. J. Tatem, S. Lai, S. Zhou, H. Jiang, D. Guo, Z. Huang, J. P. Messina, X. Xiao, C. Linard, T. P. Van Boeckel, V. Martin, S. Bhatt, P. W. Gething, J. J. Farrar, S. I. Hay, and H. Yu.
"Nature Communications", Vol. 5, Pages 4116, 2014.

Exploiting fugitive resources: How long-lived is "fugitive"? Fallen trees are a long-lasting reward for Ips typographus (Coleoptera, Curculionidae, Scolytinae)
M. Louis, J.-C. Grégoire, and P.-F. Pelisson.
"Forest Ecology and Management", Vol. 331, Pages 129-134, 2014.

Rapid increase in dispersal during range expansion in the invasive ladybird Harmonia axyridis
E. Lombaert, A. Estoup, B. Facon, Joubard, J.-C. Grégoire, A. Jannin, Blin, and T. Guillemaud.
"Journal of Evolutionary Biology", Vol. 3, Pages 508-517, 2014.

Spatial epidemiology of porcine reproductive and respiratory syndrome in Thailand
W. Thanapongtharm, C. Linard, N. Pamaranon, S. Kawkalong, T. Noimoh, K. Chanachai, T. Parakgamawongsa, and M. Gilbert.
"BMC Veterinary Research", Vol. 10, Pages 174, 2014.

Agro-environmental determinants of avian influenza circulation: a multisite study in Thailand, Vietnam and Madagascar
M. C. Paul, M. Gilbert, S. Desvaux, H. Rasamoelina Andriamanivo, M. Peyre, N. V. Khong, W. Thanapongtharm, and V. Chevalier.
"PLoS One", Vol. 9, Issue 7, Pages e101958, 2014.

Flying the nest: male dispersal and multiple paternity enables extrafamilial matings for the invasive bark beetle Dendroctonus micans: Multiple paternity in sib-mating bark beetles
C. Fraser, O. Brahy, P. Mardulyn, L. Dohet, F. Mayer, and J.-C. Grégoire.
"Heredity", Vol. 113, Pages 327-333, 2014.

A semi-artificial rearing system for the specialist predatory ladybird Cryptolaemus montrouzieri
S. S. Maes, T. T. Antoons, P. P. de Clercq, and J.-C. Grégoire.
"BioControl", Vol. 59, Issue 5, Pages 557-564, 2014.

Prey range of the predatory ladybird Cryptolaemus montrouzieri
S. S. Maes, J.-C. Grégoire, and P. P. de Clercq.
"BioControl", Vol. 59, Issue 6, Pages 729-738, 2014.

Dispersal potential of native and exotic predatory ladybirds as measured by a computer-monitored flight mill
S. S. Maes, X. X. Massart, J.-C. Grégoire, and P. P. de Clercq.
"BioControl", Vol. 59, Issue 4, Pages 415-425, 2014.

Risks of avian influenza transmission in areas of intensive free-ranging duck production with wild waterfowl
J. Cappelle, D. Zhao, M. Gilbert, M. I. Nelson, S. H. Newman, J. Y. Takekawa, N. Gaidet, D. J. Prosser, Y. Liu, P. Li, Y. Shu, and X. Xiao.
"EcoHealth", Vol. 11, Issue 1, Pages 109-119, 2014.

Rivers and flooded areas identified by medium-resolution remote sensing improve risk prediction of the highly pathogenic avian influenza H5N1 in Thailand
W. Thanapongtharm, T. P. Van Boeckel, C. Biradar, X. Xiao, and M. Gilbert.
"Geospatial Health", Vol. 8, Issue 1, Pages 193, 2013.

Assessment of the functional role of tree diversity: the multi-site FORBIO experiment
K. Verheyen, Ceunen, Ampoorter, L. Baeten, Bosman, E. Branquart, M. Carnol, De Wandeler, J.-C. Grégoire, Lhoir, B. Muys, Nurlaya Setiawan, Vanhellemont, and Q. Ponette.
"Plant Ecology and Evolution", Vol. 146, Issue 1, Pages 1-10, 2013.

Modeling habitat suitability for occurrence of highly pathogenic avian influenza virus H5N1 in domestic poultry in Asia: A spatial multicriteria decision analysis approach
K. B. Stevens, M. Gilbert, and D. U. Pfeiffer.
"Spatial and Spatiotemporal Epidemiology", Vol. 4, Pages 1-14, 2013.

Climate change and the spread of vector-borne diseases: using approximate Bayesian computation to compare invasion scenarios for the bluetongue virus vector Culicoides imicola in Italy
P. Mardulyn, M. Goffredo, A. Conte, G. Hendrickx, R. Meiswinkel, T. Balenghien, S. Sghaier, Y. Lohr, and M. Gilbert.
"Molecular Ecology", Vol. 22, Issue 9, Pages 2456-2466, 2013.

The Nosoi commute: a spatial perspective on the rise of BSL-4 laboratories in cities
T. P. Van Boeckel, M. J. Tildesley, C. Linard, J. Halloy, M. J. Keeling, and M. Gilbert.
"arXiv preprint arXiv:1312.3283", 2013.

Modelling spatial patterns of urban growth in Africa
C. Linard, A. J. Tatem, and M. Gilbert.
"Applied Geography", Vol. 44, Pages 23-32, 2013.

Frost impacts on beech (Fagus sylvatica L.) susceptibility to scolytine ambrosia beetles
S. La Spina, C. De Cannière, A. Dekri, and J.-C. Grégoire.
"Agricultural and Forest Entomology", Vol. 15, Issue 2, Pages 157-167, 2013.

Can landscape metrics help determine the Culicoides imicola distribution in Italy?
C. Ippoliti, M. Gilbert, S. Vanhuysse, M. Goffredo, G. Satta, E. Wolff, and A. Conte.
"Geospatial Health", Vol. 8, Issue 1, Pages 267–277, 2013.

Predicting hotspots for influenza virus reassortment
T. L. Fuller, M. Gilbert, V. Martin, J. Cappelle, P. Hosseini, K. Y. Njabo, S. Abdel Aziz, X. Xiao, P. Daszak, and T. B. Smith.
"Emerging Infectious Diseases", Vol. 19, Issue 4, Pages 581-588, 2013.

Farms, pastures and woodlands: the fine-scale distribution of Palearctic Culicoides spp. biting midges along an agro-ecological gradient
T. Rigot, M. Vercauteren Drubbel, J.-C. DeléColle, and M. Gilbert.
"Medical and Veterinary Entomology", Vol. 27, Issue 1, Pages 29-38, 2013.

Quantifying the effects of using detailed spatial demographic data on health metrics: a systematic analysis for the AfriPop, AsiaPop, and AmeriPop projects
A. J. Tatem, A. E. Gaughan, F. R. Stevens, N. N. Patel, P. Jia, A. Pandey, and C. Linard.
"The Lancet", Vol. 381, Pages S142, 2013.

Invasive alien predator causes rapid declines of native European ladybirds
H. Roy, T. Adriaens, N. Isaac, M. Kenis, T. Onkelinx, G. S. Martin, P. Brown, L. Hautier, R. Poland, D. Roy, R. Comont, R. Eschen, R. Frost, R. Zindel, J. Van Vlaenderen, O. Nedved, H. Ravn, J.-C. Grégoire, J.-C. de Biseau D'Hauteville, and D. Maes.
"Diversity and Distributions", 2012.

Monitoring the impact of decentralised chronic care services on patient travel time in rural Africa-methods and results in Northern Malawi
R. M. Houben, T. P. Van Boeckel, V. Mwinuka, P. Mzumara, K. Branson, C. Linard, F. Chimbwandira, N. French, J. R. Glynn, and A. C. Crampin.
"International Journal of Health Geographics", Vol. 11, Issue 1, Pages 1, 2012.

Quantifying the spatial dependence of Culicoides midge samples collected by Onderstepoort-type blacklight traps: an experimental approach to infer the range of attraction of light traps
T. Rigot, and M. Gilbert.
"Medical and Veterinary Entomology", Vol. 26, Issue 2, Pages 152-161, 2012.

Large-scale spatial population databases in infectious disease research
C. Linard, and A. J. Tatem.
"International Journal of Health Geographics", Vol. 11, Issue 1, Pages 7, 2012.

Predicting the spatio-temporal distribution of Culicoides imicola in Sardinia using a discrete-time population model
T. Rigot, A. Conte, M. Goffredo, E. Ducheyne, G. Hendrickx, and M. Gilbert.
"Parasites and Vectors", Vol. 5, Issue 1, Pages 1, 2012.

Effects of two varieties of Bacillus thuringiensis maize on the biology of Plodia interpunctella
A. Gryspeirt, and J.-C. Grégoire.
"Toxins", Vol. 4, Pages 373-389, 2012.

The influence of acclimation, endosymbionts and diet on the supercooling capacity of the predatory bug Macrolophus pygmaeus
S. S. Maes, T. T. Machtelinckx, P. P. de Clercq, M. M. Moens, and J.-C. Grégoire.
"BioControl", Vol. 57, Issue 5, Pages 643-651, 2012.

Effectiveness of the High Dose/Refuge Strategy for Managing Pest Resistance to Bacillus thuringiensis (Bt) Plants Expressing One or Two Toxins.
A. Gryspeirt, and J.-C. Grégoire.
"Toxins", Vol. 4, Issue 10, Pages 810-835, 2012.

Lengthening of insect development on bt zone results in adult emergence asynchrony: does it influence the effectiveness of the high dose/refuge zone strategy?
A. Gryspeirt, and J.-C. Grégoire.
"Toxins", Vol. 4, Issue 11, Pages 1323-1342, 2012.

Low temperature tolerance and starvation ability of the oak processionary moth: Implications in a context of increasing epidemics
N. Meurisse, G. Hoch, A. Schop, A. Battisti, and J.-C. Grégoire.
"Agricultural and Forest Entomology", 2012.

Predicting the distribution of intensive poultry farming in Thailand
T. P. Van Boeckel, W. Thanapongtharm, T. Robinson, L. D’Aietti, and M. Gilbert.
"Agriculture, Ecosystems a,d Environment", Vol. 149, Pages 144-153, 2012.

Improving risk models for avian influenza: the role of intensive poultry farming and flooded land during the 2004 Thailand epidemic
T. P. Van Boeckel, W. Thanapongtharm, T. Robinson, C. M. Biradar, X. Xiao, and M. Gilbert.
"PLoS One", Vol. 7, Issue 11, Pages e49528, 2012.

Mapping populations at risk: improving spatial demographic data for infectious disease modeling and metric derivation
A. J. Tatem, S. Adamo, N. Bharti, C. R. Burgert, M. Castro, A. Dorelien, G. Fink, C. Linard, M. John, L. Montana, and others.
"Population Health Metrics", Vol. 10, Issue 1, Pages 1, 2012.

Characterizing the interface between wild ducks and poultry to evaluate the potential of transmission of avian pathogens
J. Cappelle, N. Gaidet, S. A. Iverson, J. Y. Takekawa, S. H. Newman, B. Fofana, and M. Gilbert.
"International Journal of Health Geographics", Vol. 10, Issue 1, Pages 1, 2011.

Population dynamics in changing environments: the case of an eruptive forest pest species
K. L. Kausrud, B. Okland, O. Skarpaas, J.-C. Grégoire, N. Erbilgin, and N. C. Stenseth.
"Biological Reviews of the Cambridge Philosophical Society", Vol. 87, Issue 1, Pages 34-51, 2011.

Modelling the distribution of domestic ducks in Monsoon Asia
T. P. Van Boeckel, D. Prosser, G. Franceschini, C. Biradar, W. Wint, T. Robinson, and M. Gilbert.
"Agriculture, Ecosystems and Environment", Vol. 141, Issue 3-4, Pages 373-380, 2011.

Population mapping of poor countries
A. Tatem, and C. Linard.
"Nature", Vol. 474, Issue 7349, Pages 36, 2011.

Modelling the distribution of chickens, ducks, and geese in China
D. J. Prosser, J. Wu, E. C. Ellis, F. Gale, T. P. Van Boeckel, W. Wint, T. Robinson, X. Xiao, and M. Gilbert.
"Agriculture, Ecosystems and Environment", Vol. 141, Issue 3-4, Pages 381-389, 2011.

Identifying risk factors of highly pathogenic avian influenza (H5N1 subtype) in Indonesia
L. Loth, M. Gilbert, J. Wu, C. Czarnecki, M. Hidayat, and X. Xiao.
"Preventive Veterinary Medicine", Vol. 102, Issue 1, Pages 50-58, 2011.

Larval performances, heterogeneous development and life cycle completion of the Siberian moth, Dendrolimus sibiricus (Lepidoptera: Lasiocampidae) on potential host plants in Europe: a laboratory study on potted trees
N. Kirichenko, J. Flament, Y. Baranchikov, and J.-C. Grégoire.
"European Journal of Forest Research", 2011.

Alkaloids provide evidence of intraguild predation on native coccinellids by Harmonia axyridis in the field
L. Hautier, G. San Martin Y Gomez, P. Callier, J.-C. de Biseau D'Hauteville, and J.-C. Grégoire.
"Biological Invasions", Vol. 13, Pages 1805-1814, 2011.

Assessing the use of global land cover data for guiding large area population distribution modelling
C. Linard, M. Gilbert, and A. J. Tatem.
"GeoJournal", Vol. 76, Issue 5, Pages 525-538, 2011.

Trees wanted — dead or alive! Host selection and population dynamics in tree-killing bark beetles
K. L. Kausrud, J.-C. Grégoire, O. Skarpaas, N. Erbilgin, M. Gilbert, B. Økland, and N. C. Stenseth.
"PLoS One", Vol. 6, Issue 5, Pages e18274, 2011.

Risk-based surveillance for avian influenza control along poultry market chains in South China: The value of social network analysis
V. Martin, X. Zhou, E. Marshall, B. Jia, G. Fusheng, M. A. FrancoDixon, N. DeHaan, D. U. Pfeiffer, R. J. Soares Magalhães, and M. Gilbert.
"Preventive Veterinary Medicine", Vol. 102, Issue 3, Pages 196-205, 2011.

Monitoring of the intra-dermal tuberculosis skin test performed by Belgian field practitioners
M.-F. Humblet, K. Walravens, O. Salandre, M. L. Boschiroli, M. Gilbert, D. Berkvens, M. Fauville-Dufaux, J. Godfroid, J. Dufey, A. Raskin, L. Vanholme, and C. Saegerman.
"Research in Veterinary Science", Vol. 91, Issue 2, Pages 199-207, 2011.

The effects of spatial population dataset choice on estimates of population at risk of disease
A. J. Tatem, N. Campiz, P. W. Gething, R. W. Snow, and C. Linard.
"Population Health Metrics", Vol. 9, Issue 1, Pages 1, 2011.

Spatial distribution and risk factors of highly pathogenic avian influenza (HPAI) H5N1 in China
V. Martin, D. U. Pfeiffer, X. Zhou, X. Xiao, D. J. Prosser, F. Guo, and M. Gilbert.
"PLoS Pathogens", Vol. 7, Issue 3, Pages e1001308, 2011.

Anthropogenic factors and the risk of highly pathogenic avian influenza H5N1: prospects from a spatial-based model
M. Paul, S. Tavornpanich, D. Abrial, P. Gasqui, M. Charras-Garrido, W. Thanapongtharm, X. Xiao, M. Gilbert, F. Roger, and C. Ducrot.
"Veterinary Research", Vol. 41, Issue 3, Pages 28, 2010.

The cold European winter of 2005–2006 assisted the spread and persistence of H5N1 influenza virus in wild birds
D. Ottaviani, S. de la Rocque, S. Khomenko, M. Gilbert, S. H. Newman, B. Roche, K. Schwabenbauer, J. Pinto, T. P. Robinson, and J. Slingenbergh.
"EcoHealth", Vol. 7, Issue 2, Pages 226-236, 2010.

Resource allocation for efficient environmental management: Theory for environmental management
M. A. McCarthy, C. J. Thompson, C. Hauser, M. A. Burgman, H. P. Possingham, M. L. Moir, T. Tiensin, and M. Gilbert.
"Ecology Letters", Vol. 13, Issue 10, Pages 1280-1289, 2010.

A high resolution spatial population database of Somalia for disease risk mapping
C. Linard, V. A. Alegana, A. M. Noor, R. W. Snow, and A. J. Tatem.
"International Journal of Health Geographics", Vol. 9, Issue 1, Pages 1, 2010.

Persistence of highly pathogenic avian Influenza H5N1 virus defined by agro-ecological niche
L. Hogerwerf, R. G. Wallace, D. Ottaviani, J. Slingenbergh, D. Prosser, L. Bergmann, and M. Gilbert.
"EcoHealth", Vol. 7, Issue 2, Pages 213-225, 2010.

Risk factors and clusters of highly pathogenic avian influenza H5N1 outbreaks in Bangladesh
L. Loth, M. Gilbert, M. G. Osmani, A. M. Kalam, and X. Xiao.
"Preventive Veterinary Medicine", Vol. 96, Issue 1-2, Pages 104-113, 2010.

Impact of poplar water status on leaf-beetle (Chrysomela populi) survival and feeding
S. La Spina, J.-C. Grégoire, P. Mertens, and C. De Cannière.
"Annals of Forest Science", Vol. 67, Pages 209-214, 2010.

New assessment of bovine tuberculosis risk factors in Belgium based on nationwide molecular epidemiology
M.-F. Humblet, M. Gilbert, M. Govaerts, M. Fauville-Dufaux, K. Walravens, and C. Saegerman.
"Journal of Clinical Microbiology", Vol. 48, Issue 8, Pages 2802-2808, 2010.

Pathogenic landscapes: Interactions between land, people, disease vectors, and their animal hosts
E. F. Lambin, A. Tran, S. O. Vanwambeke, C. Linard, and V. Soti.
"International Journal of Health Geographics", Vol. 9, Issue 1, Pages 54, 2010.

Comparing methods for measuring the rate of spread of invading populations
M. Gilbert, and A. Liebhold.
"Ecography", Vol. 33, Issue 5, Pages 809-817, 2010.

Ecological modeling of the spatial distribution of wild waterbirds to identify the main areas where avian influenza viruses are circulating in the Inner Niger Delta, Mali
J. Cappelle, O. Girard, B. Fofana, N. Gaidet, and M. Gilbert.
"EcoHealth", Vol. 7, Issue 3, Pages 283-293, 2010.

Eight years of entomological surveillance in Italy show no evidence of Culicoides imicola geographical range expansion
A. Conte, M. Gilbert, and M. Goffredo.
"Journal of Applied Ecology", 2009.

Native and exotic coniferous species in Europe – possible host plants for the potentially invasive Siberian moth, Dendrolimus sibiricus Tschtv. (Lepidoptera, Lasiocampidae)
N. I. Kirichenko, J. Flament, Y. N. Baranchikov, and J.-C. Grégoire.
"EPPO Bulletin", Vol. 38, Issue 2, Pages 259-263, 2008.

Intraguild predation by Harmonia axyridis on coccinellids revealed by exogenous alkaloid sequestration
L. Hautier, J.-C. Grégoire, J. de Schauwers, G. S. Martin, P. Callier, J.-P. Jansen, and J.-C. de Biseau.
"Chemoecology", Vol. 18, Issue 3, Pages 191-196, 2008.

A wind density model to quantify the airborne spread of Culicoides species during north-western Europe bluetongue epidemic, 2006
G. Hendrickx, M. Gilbert, C. Staubach, A. Elbers, K. Mintiens, G. Gerbier, and E. Ducheyne.
"Preventive Veterinary Medicine", Vol. 87, Issue 1-2, Pages 162-181, 2008.

Kairomone traps: a tool for monitoring the invasive spruce bark beetle Dendroctonus micans (Coleoptera: Scolytinae) and its specific predator, Rhizophagus grandis (Coleoptera: Monotomidae)
N. Meurisse, D. Couillien, and J.-C. Grégoire.
"Journal of Applied Ecology", Vol. 45, Issue 2, Pages 537-548, 2008.

A North American invasive seed pest, Megastigmus spermotrophus (Wachtl) (Hymenoptera: Torymidae): Its populations and parasitoids in a European introduction zone
A.-C. Mailleux, A. Roques, J.-M. Molenberg, and J.-C. Grégoire.
"Biological Control", Vol. 44, Issue 2, Pages 137-141, 2008.

Avian influenza, domestic ducks and rice agriculture in Thailand
M. Gilbert, X. Xiao, P. Chaitaweesub, W. Kalpravidh, S. Premashthira, S. Boles, and J. Slingenbergh.
"Agriculture, Ecosystems and Environment", Vol. 119, Issue 3-4, Pages 409-415, 2007.

Remote sensing, ecological variables, and wild bird migration related to outbreaks of highly pathogenic H5N1 avian influenza
X. Xiao, M. Gilbert, J. Slingenbergh, F. Lei, and S. Boles.
"Journal of Wildlife Diseases", Vol. 43, Issue 1, Pages 40, 2007.

Coniferous round wood imports from Russia and Baltic countries to Belgium. A pathway analysis for assessing risks of exotic pest insect introductions: Pathway analysis
F. Piel, M. Gilbert, C. De Cannière, and J.-C. Grégoire.
"Diversity and Distributions", Vol. 14, Issue 2, Pages 318-328, 2007.

Predator/prey ratios: a measure of bark-beetle population status influenced by stand composition in different French stands after the 1999 storms
N. Warzée, M. Gilbert, and J.-C. Grégoire.
"Annals of Forest Science", Vol. 63, Issue 3, Pages 301-308, 2006.

New occurrence of Ips duplicatus Sahlberg in Herstal (Liege, Belgium)
F. Piel, J.-C. Grégoire, and M. Knížek.
"EPPO Bulletin", Vol. 36, Issue 3, Pages 529-530, 2006.

Forecasting Cameraria ohridella invasion dynamics in recently invaded countries: from validation to prediction: A priori prediction of invasion dynamics
M. Gilbert, S. Guichard, J. Freise, J.-C. Grégoire, W. Heitland, N. Straw, C. Tilbury, and S. Augustin.
"Journal of Applied Ecology", Vol. 42, Issue 5, Pages 805-813, 2005.

Spatial structure of litter-dwelling ant distribution in a subtropical dry forest
L. Theunis, M. Gilbert, Y. Roisin, and M. Leponce.
"Insectes Sociaux", Vol. 52, Issue 4, Pages 366-377, 2005.

Characteristics of cattle movements in Britain–an analysis of records from the Cattle Tracing System
A. Mitchell, D. Bourn, J. Mawdsley, W. Wint, R. Clifton-Hadley, and M. Gilbert.
"Animal Science", Vol. 80, Issue 03, Pages 265–273, 2005.

Cattle movements and bovine tuberculosis in Great Britain
M. Gilbert, A. Mitchell, D. Bourn, J. Mawdsley, R. Clifton-Hadley, and W. Wint.
"Nature", Vol. 435, Issue 7041, Pages 491-496, 2005.

Occurrence of Ips typographus (Col., Scolytidae) along an urbanization gradient in Brussels, Belgium
F. Piel, M. Gilbert, A. Franklin, and J.-C. Grégoire.
"Agricultural and Forest Entomology", Vol. 7, Issue 2, Pages 161–167, 2005.

Highly pathogenic avian influenza H5N1, Thailand, 2004
T. Tiensin, P. Chaitaweesub, T. Songserm, A. Chaisingh, W. Hoonsuwan, C. Buranathai, T. Parakamawongsa, S. Premashthira, A. Amonsin, M. Gilbert, and others.
"Emerging Infectious Diseases", Vol. 11, Issue 11, Pages 1664–1672, 2005.

Species richness coincidence: conservation strategies based on predictive modelling
D. Maes, D. Bauwens, L. De Bruyn, A. Anselin, G. Vermeersch, W. Van Landuyt, G. De Knijf, and M. Gilbert.
"Biodiversity and Conservation", Vol. 14, Issue 6, Pages 1345-1364, 2005.

Patterns of spread and persistence of foot-and-mouth disease types A, O and Asia-1 in Turkey: a meta-population approach
M. Gilbert, S. Aktas, H. Mohammed, P. Roeder, K. Sumption, M. Tufan, and J. Slingenbergh.
"Epidemiology and Infection", Vol. 133, Issue 3, Pages 537-545, 2005.

Post-storm surveys reveal large-scale spatial patterns and influences of site factors, forest structure and diversity in endemic bark-beetle populations
M. Gilbert, L.-M. Nageleisen, A. Franklin, and J.-C. Grégoire.
"Landscape Ecology", Vol. 20, Issue 1, Pages 35-49, 2005.

Dominance in spatial distribution of avian influenza (H5N1) outbreaks
R. C. Cooksey, J. H. de Waard, M. A. Yakrus, S. R. Toney, O. Da Mata, S. Nowicki, K. Sohner, E. Koch, C. A. Petti, R. E. Morey, and others.
"International Journal of Systematic and Evolutionary Microbiology", Vol. 54, Issue 2385, 2004.

Biological differences reflect host preference in two parasitoids attacking the bark beetle Ips typographus (Coleoptera: Scolytidae) in Belgium
E. Hougardy, and J.-C. Grégoire.
"Bulletin of Entomological Research", Vol. 94, Issue 4, Pages 341-347, 2004.

Monitoring the regional spread of the invasive leafminer Cameraria ohridella (Lepidoptera: Gracillariidae) by damage assessment and pheromone trapping
S. Augustin, S. Guichard, A. Svatoš, and M. Gilbert.
"Environmental Entomology", Vol. 33, Issue 6, Pages 1584–1592, 2004.

Ecological sources of zoonotic diseases
J. Slingenbergh, M. Gilbert, K. d. Balogh, and W. Wint.
"Revue scientifique et technique-Office international des épizooties", Vol. 23, Issue 2, Pages 467–484, 2004.

Prediction of butterfly diversity hotspots in Belgium: a comparison of statistically focused and land use-focused models
D. Maes, M. Gilbert, N. Titeux, P. Goffart, and R. L. Dennis.
"Journal of Biogeography", Vol. 30, Issue 12, Pages 1907–1920, 2003.

Cleptoparasitism increases the host finding ability of a polyphagous parasitoid species, Rhopalicus tutela (Hymenoptera: Pteromalidae)
E. Hougardy, and J.-C. Grégoire.
"Behavioral Ecology and Sociobiology", Vol. 55, Issue 2, Pages 184-189, 2003.

Spatial patterns and infestation processes in the horse chestnut leafminer Cameraria ohridella: a tale of two cities
M. Gilbert, A. Svatoš, M. Lehmann, and S. Bacher.
"Entomologia Experimentalis et Applicata", Vol. 107, Issue 1, Pages 25–37, 2003.

Marking bark beetle parasitoids within the host plant with rubidium for dispersal studies
E. Hougardy, P. Pernet, M. Warnau, J. Delisle, and J.-C. Grégoire.
"Entomologia Experimentalis et Applicata", Vol. 108, Issue 2, Pages 107-114, 2003.

Fluorescence in situ hybridization: a new method for determining primary sex ratio in ants
L. de Menten, H. Niculita, M. Gilbert, D. Delneste, and S. Aron.
"Molecular Ecology", Vol. 12, Issue 6, Pages 1637-1648, 2003.

Overview of development of an anti-attractant based technology for spruce protection against Ips typographus: From past failures to future success
R. Jakuš, F. Schlyter, Q.-H. Zhang, M. Blaženec, R. Vaverčák, W. Grodzki, D. Brutovský, E. Lajzová, M. Turčáni, M. Bengtsson, Z. Blum, and J.-C. Grégoire.
"Anzeiger für Schädlingskunde", Vol. 76, Issue 4, Pages 89-99, 2003.

Spatial pattern of invading Dendroctonus micans (Coleoptera: Scolytidae) populations in the United Kingdom
M. Gilbert, N. Fielding, H. F. Evans, and J.-C. Grégoire.
"Canadian Journal of Forest Research", Vol. 33, Issue 4, Pages 712-725, 2003.

Visual, semi-quantitative assessments allow accurate estimates of leafminer population densities: an example comparing image processing and visual evaluation of damage by the horse chestnut leafminer Cameraria ohridella (Lep., Gracillariidae)
M. Gilbert, and J.-C. Grégoire.
"Journal of Applied Entomology", Vol. 127, Issue 6, Pages 354–359, 2003.

Chromosome number in Dendroctonus micans and karyological divergence within the genus Dendroctonus (Coleoptera: Scolytidae)
G. Zúñiga, Y. Salinas-Moreno, J. L. Hayes, J. C. Grégoire, and R. Cisneros.
"The Canadian Entomologist", Vol. 134, Issue 4, Pages 503-510, 2002.

Social parasitism in ants: effects of the inquiline parasite Plagiolepis xene St. on queen distribution and worker production of its host Plagiolepis pygmaea Latr.
L. Passera, M. Gilbert, and S. Aron.
"Insectes Sociaux", Vol. 48, Issue 1, Pages 74–79, 2001.

Spatial distribution of ambrosia-beetle catches: a possibly useful knowledge to improve mass-trapping
J.-C. Grégoire, F. Piel, M. De Proft, and M. Gilbert.
"Integrated Pest Management Reviews", Vol. 6, Issue 3-4, Pages 237–242, 2001.

Past attacks influence host selection by the solitary bark beetle Dendroctonus micans
M. Gilbert, G. Vouland, and J.-C. Grégoire.
"Ecological Entomology", Vol. 26, Issue 2, Pages 133–142, 2001.

Dose-dependent response and preliminary observations on attraction range of Ips typographus to pheromones at Low release rates
A. J. Franklin, and J.-C. Grégoire.
"Journal of Chemical Ecology", Vol. 27, Issue 12, Pages 2425-2435, 2001.

Bark-beetle parasitoids population surveys following storm damage in spruce stands in the Vosges region (France)
E. Hougardy, and J.-C. Grégoire.
"Integrated Pest Management Reviews", Vol. 6, Issue 3-4, Pages 163-168, 2001.

Recapture of Ips typographus L. (Col., Scolytidae) with attractants of low release rates: localized dispersion and environmental influences
A. J. Franklin, C. Debruyne, and J.-C. Grégoire.
"Agricultural and Forest Entomology", Vol. 2, Issue 4, Pages 259-270, 2000.

Spruce stands provide natural food sources to adult hymenopteran parasitoids of bark beetles
E. Hougardy, and J.-C. Grégoire.
"Entomologia Experimentalis et Applicata", Vol. 96, Issue 3, Pages 253-263, 2000.

Large-scale versus small-scale variation decomposition, followed by kriging based on a relative variogram, in presence of a non-stationary residual variance
L. Raty, and M. Gilbert.
"Journal of Geographic Information and Decision Analysis", Vol. 2, Issue 2, Pages 91–115, 1998.